Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequence of Riemerella anatipestifer Serotype 10 Strain HXb2.

ABSTRACT: The complete genome sequence of highly virulent Riemerella anatipestifer strain HXb2 was determined. The genome consisted of a single circular chromosome of 2,425,237 bp containing 2,383 putative open reading frames (ORFs), 9 rRNA operons, and 40 tRNA genes.

SUBMITTER: Hu Q

PROVIDER: S-EPMC5477191 | biostudies-literature | 2017 May

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Sequence of <i>Riemerella anatipestifer</i> Serotype 10 Strain HXb2.

Hu Qinghai Q Qi Jingjing J Bo Huimin H Liu Guangqing G Tao Minjie M Ding Yunzhu Y Xue Yafei Y

Genome announcements 20170504 18

The complete genome sequence of highly virulent <i>Riemerella anatipestifer</i> strain HXb2 was determined. The genome consisted of a single circular chromosome of 2,425,237 bp containing 2,383 putative open reading frames (ORFs), 9 rRNA operons, and 40 tRNA genes. ...[more]

PMID: 28473383

Similar Datasets

Complete Genome Sequence of Riemerella anatipestifer Serotype 1 Strain CH3.

Project description:Riemerella anatipestifer is a well-described pathogenic bacterium, which is reported worldwide as the cause of epizootic infectious polyserositis of waterfowl and other avian species. Here, we present the complete genome sequence of R. anatipestifer strain CH3, the serotype 1 prevalent in China.

| S-EPMC4335342 | biostudies-literature

Complete genome sequence of Riemerella anatipestifer reference strain.

Project description:Riemerella anatipestifer is an infectious pathogen causing serositis in ducks. We had the genome of the R. anatipestifer reference strain ATCC 11845 sequenced. The completed draft genome consists of one circular chromosome with 2,164,087 bp. There are 2,101 genes in the draft, and its GC content is 35.01%.

| S-EPMC3370850 | biostudies-literature

Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845).

Project description:Riemerella anatipestifer (Hendrickson and Hilbert 1932) Segers et al. 1993 is the type species of the genus Riemerella, which belongs to the family Flavobacteriaceae. The species is of interest because of the position of the genus in the phylogenetic tree and because of its role as a pathogen of commercially important avian species worldwide. This is the first completed genome sequence of a member of the genus Riemerella. The 2,155,121 bp long genome with its 2,001 protein-coding and 51 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

| S-EPMC3111989 | biostudies-literature

Complete genome sequence of the pathogenic bacterium Riemerella anatipestifer strain RA-GD.

Project description:Riemerella anatipestifer is a well-described pathogen of waterfowl and other avian species which can cause a great loss to the poultry industry. Here we obtained the complete genome sequence of R. anatipestifer strain RA-GD, which was isolated from an infected duck in Guangzhou, China, and was cultivated in our laboratory.

| S-EPMC3133133 | biostudies-literature

Draft Genome Sequence of Riemerella anatipestifer Strain xi1.

Project description:Riemerella anatipestifer is an important bacterial pathogen associated with epizootic infections in waterfowl and various other birds. The complete genome sequence of Riemerella anatipestifer xi1, isolated in China, was sequenced. The genome consisted of 2,062,911 bp carrying 1,879 predicted genes.

| S-EPMC9022536 | biostudies-literature

Genome Sequence of Avirulent Riemerella anatipestifer Strain RA-SG.

Project description:Riemerella anatipestifer is a pathogenic bacterium that has spread all over the world and is associated with epizootic infections in waterfowl and other avian species. R. anatipestifer RA-SG is an avirulent strain, isolated from an infected duck in Guangdong province, China. The genome sequence of this species is presented herein.

| S-EPMC3593330 | biostudies-literature

Draft Genome Sequence of Riemerella anatipestifer Isolate 17CS0503.

Project description:Riemerella anatipestifer is a Gram-negative bacterium belonging to the family Flavobacteriaceae It is primarily associated with acute septicemia in younger birds. The R. anatipestifer isolate 17CS0503 described here was isolated from a Peking duck (Anas platyrhynchos domesticus) in Hannover, Germany, in 1999.

| S-EPMC5958266 | biostudies-literature

Whole-Genome Sequence Analysis and Genome-Wide Virulence Gene Identification of Riemerella anatipestifer Strain Yb2.

Project description:Riemerella anatipestifer is a well-described pathogen of waterfowl and other avian species that can cause septicemic and exudative diseases. In this study, we sequenced the complete genome of R. anatipestifer strain Yb2 and analyzed it against the published genomic sequences of R. anatipestifer strains DSM15868, RA-GD, RA-CH-1, and RA-CH-2. The Yb2 genome contains one circular chromosome of 2,184,066 bp with a 35.73% GC content and no plasmid. The genome has 2,021 open reading frames that occupy 90.88% of the genome. A comparative genomic analysis revealed that genome organization is highly conserved among R. anatipestifer strains, except for four inversions of a sequence segment in Yb2. A phylogenetic analysis found that the closest neighbor of Yb2 is RA-GD. Furthermore, we constructed a library of 3,175 mutants by random transposon mutagenesis, and 100 mutants exhibiting more than 100-fold-attenuated virulence were obtained by animal screening experiments. Southern blot analysis and genetic characterization of the mutants led to the identification of 49 virulence genes. Of these, 25 encode cytoplasmic proteins, 6 encode cytoplasmic membrane proteins, 4 encode outer membrane proteins, and the subcellular localization of the remaining 14 gene products is unknown. The functional classification of orthologous-group clusters revealed that 16 genes are associated with metabolism, 6 are associated with cellular processing and signaling, and 4 are associated with information storage and processing. The functions of the other 23 genes are poorly characterized or unknown. This genome-wide study identified genes important to the virulence of R. anatipestifer.

| S-EPMC4495219 | biostudies-literature

Complete genome sequence of Streptococcus suis serotype 14 strain JS14.

Project description:Streptococcus suis is an important zoonotic agent leading to a variety of diseases in swine and can be transmitted to human beings upon close contact. Here, we report the complete genome sequence of S. suis serotype 14 strain JS14 which was isolated from a diseased pig in Jiangsu Province, China.

| S-EPMC3133069 | biostudies-literature

Complete genome sequence of Streptococcus suis serotype 3 strain ST3.

Project description:Streptococcus suis is a zoonotic pathogen causing economic loss in the swine industry and is also a threat to human health. To date, the mechanism of pathogenesis is not fully understood. Here, we report the complete genome sequence of S. suis strain ST3 of serotype 3, which provides opportunities to reveal genetic basis of infection of S. suis non-serotype 2 strains.

| S-EPMC3133292 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data