Dataset Information

Demonstration and validation of Kernel Density Estimation for spatial meta-analyses in cognitive neuroscience using simulated data.

ABSTRACT: The data presented in this article are related to the research article entitled "Convergence of semantics and emotional expression within the IFG pars orbitalis" (Belyk et al., 2017) [1]. The research article reports a spatial meta-analysis of brain imaging experiments on the perception of semantic compared to emotional communicative signals in humans. This Data in Brief article demonstrates and validates the use of Kernel Density Estimation (KDE) as a novel statistical approach to neuroimaging data. First, we performed a side-by-side comparison of KDE with a previously published meta-analysis that applied activation likelihood estimation, which is the predominant approach to meta-analyses in cognitive neuroscience. Second, we analyzed data simulated with known spatial properties to test the sensitivity of KDE to varying degrees of spatial separation. KDE successfully detected true spatial differences in simulated data and displayed few false positives when no true differences were present. R code to simulate and analyze these data is made publicly available to facilitate the further evaluation of KDE for neuroimaging data and its dissemination to cognitive neuroscientists.

SUBMITTER: Belyk M

PROVIDER: S-EPMC5480230 | biostudies-literature | 2017 Aug

REPOSITORIES: biostudies-literature

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Demonstration and validation of Kernel Density Estimation for spatial meta-analyses in cognitive neuroscience using simulated data.

Belyk Michel M Brown Steven S Kotz Sonja A SA

Data in brief 20170607

The data presented in this article are related to the research article entitled "Convergence of semantics and emotional expression within the IFG pars orbitalis" (Belyk et al., 2017) [1]. The research article reports a spatial meta-analysis of brain imaging experiments on the perception of semantic compared to emotional communicative signals in humans. This Data in Brief article demonstrates and validates the use of Kernel Density Estimation (KDE) as a novel statistical approach to neuroimaging ...[more]

PMID: 28664169

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Project description:BackgroundOverweight and obesity are severe public health problems worldwide. Obesity can lead to chronic diseases such as type 2 diabetes mellitus. Environmental factors may affect lifestyle aspects and are therefore expected to influence people's weight status. To assess environmental risks, several methods have been tested using geographic information systems. Freely available data from online geocoding services such as OpenStreetMap (OSM) can be used to determine the spatial distribution of these obesogenic factors. The aim of our study was to develop and test a spatial obesity risk score (SORS) based on data from OSM and using kernel density estimation (KDE).MethodsObesity-related factors were downloaded from OSM for two municipalities in Bavaria, Germany. We visualized obesogenic and protective risk factors on maps and tested the spatial heterogeneity via Ripley's K function. Subsequently, we developed the SORS based on positive and negative KDE surfaces. Risk score values were estimated at 50 random spatial data points. We examined the bandwidth, edge correction, weighting, interpolation method, and numbers of grid points. To account for uncertainty, a spatial bootstrap (1000 samples) was integrated, which was used to evaluate the parameter selection via the ANOVA F statistic.ResultsWe found significantly clustered patterns of the obesogenic and protective environmental factors according to Ripley's K function. Separate density maps enabled ex ante visualization of the positive and negative density layers. Furthermore, visual inspection of the final risk score values made it possible to identify overall high- and low-risk areas within our two study areas. Parameter choice for the bandwidth and the edge correction had the highest impact on the SORS results.DiscussionThe SORS made it possible to visualize risk patterns across our study areas. Our score and parameter testing approach has been proven to be geographically scalable and can be applied to other geographic areas and in other contexts. Parameter choice played a major role in the score results and therefore needs careful consideration in future applications.

Project description:Connectivity in an aquatic setting is determined by a combination of hydrodynamic circulation and the biology of the organisms driving linkages. These complex processes can be simulated in coupled biological-physical models. The physical model refers to an underlying circulation model defined by spatially-explicit nodes, often incorporating a particle-tracking model. The particles can then be given biological parameters or behaviors (such as maturity and/or survivability rates, diel vertical migrations, avoidance, or seeking behaviors). The output of the bio-physical models can then be used to quantify connectivity among the nodes emitting and/or receiving the particles. Here we propose a method that makes use of kernel density estimation (KDE) on the output of a particle-tracking model, to quantify the infection or infestation pressure (IP) that each node causes on the surrounding area. Because IP is the product of both exposure time and the concentration of infectious agent particles, using KDE (which also combine elements of time and space), more accurately captures IP. This method is especially useful for those interested in infectious agent networks, a situation where IP is a superior measure of connectivity than the probability of particles from each node reaching other nodes. Here we illustrate the method by modeling the connectivity of salmon farms via sea lice larvae in the Broughton Archipelago, British Columbia, Canada. Analysis revealed evidence of two sub-networks of farms connected via a single farm, and evidence that the highest IP from a given emitting farm was often tens of kilometers or more away from that farm. We also classified farms as net emitters, receivers, or balanced, based on their structural role within the network. By better understanding how these salmon farms are connected to each other via their sea lice larvae, we can effectively focus management efforts to minimize the spread of sea lice between farms, advise on future site locations and coordinated treatment efforts, and minimize any impact of farms on juvenile wild salmon. The method has wide applicability for any system where capturing infectious agent networks can provide useful guidance for management or preventative planning decisions.

Dataset Information

Demonstration and validation of Kernel Density Estimation for spatial meta-analyses in cognitive neuroscience using simulated data.

Publications

Demonstration and validation of Kernel Density Estimation for spatial meta-analyses in cognitive neuroscience using simulated data.

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