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A universal method for automated gene mapping.


ABSTRACT: Small insertions or deletions (InDels) constitute a ubiquituous class of sequence polymorphisms found in eukaryotic genomes. Here, we present an automated high-throughput genotyping method that relies on the detection of fragment-length polymorphisms (FLPs) caused by InDels. The protocol utilizes standard sequencers and genotyping software. We have established genome-wide FLP maps for both Caenorhabditis elegans and Drosophila melanogaster that facilitate genetic mapping with a minimum of manual input and at comparatively low cost.

SUBMITTER: Zipperlen P 

PROVIDER: S-EPMC551539 | biostudies-literature | 2005

REPOSITORIES: biostudies-literature

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A universal method for automated gene mapping.

Zipperlen Peder P   Nairz Knud K   Rimann Ivo I   Basler Konrad K   Hafen Ernst E   Hengartner Michael M   Hajnal Alex A  

Genome biology 20050117 2


Small insertions or deletions (InDels) constitute a ubiquituous class of sequence polymorphisms found in eukaryotic genomes. Here, we present an automated high-throughput genotyping method that relies on the detection of fragment-length polymorphisms (FLPs) caused by InDels. The protocol utilizes standard sequencers and genotyping software. We have established genome-wide FLP maps for both Caenorhabditis elegans and Drosophila melanogaster that facilitate genetic mapping with a minimum of manual  ...[more]

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