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High-fidelity de novo synthesis of pathways using microchip-synthesized oligonucleotides and general molecular biology equipment.

ABSTRACT: Engineering and evaluation of synthetic routes for generating valuable compounds require accurate and cost-effective de novo synthesis of genetic pathways. Here, we present an economical and streamlined de novo DNA synthesis approach for engineering a synthetic pathway with microchip-synthesized oligonucleotides (oligo). The process integrates entire oligo pool amplification, error-removal, and assembly of long DNA molecules. We utilized this method to construct a functional lycopene biosynthetic pathway (11.9?kb encoding 10 genes) in Escherichia coli using a highly error-prone microchip-synthesized oligo pool (479 oligos) without pre-purification, and the error-frequency was reduced from 14.25/kb to 0.53/kb. This low-equipment-dependent and cost-effective method can be widely applied for rapid synthesis of biosynthetic pathways in general molecular biology laboratories.

SUBMITTER: Wan W

PROVIDER: S-EPMC5522410 | biostudies-literature | 2017 Jul

REPOSITORIES: biostudies-literature

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High-fidelity de novo synthesis of pathways using microchip-synthesized oligonucleotides and general molecular biology equipment.

Wan Wen W Lu Min M Wang Dongmei D Gao Xiaolian X Hong Jiong J

Scientific reports 20170721 1

Engineering and evaluation of synthetic routes for generating valuable compounds require accurate and cost-effective de novo synthesis of genetic pathways. Here, we present an economical and streamlined de novo DNA synthesis approach for engineering a synthetic pathway with microchip-synthesized oligonucleotides (oligo). The process integrates entire oligo pool amplification, error-removal, and assembly of long DNA molecules. We utilized this method to construct a functional lycopene biosyntheti ...[more]

PMID: 28733633

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