Unknown

Dataset Information

0

Common Molecular Subtypes Among Asian Hepatocellular Carcinoma and Cholangiocarcinoma.


ABSTRACT: Intrahepatic cholangiocarcinoma (ICC) and hepatocellular carcinoma (HCC) are clinically disparate primary liver cancers with etiological and biological heterogeneity. We identified common molecular subtypes linked to similar prognosis among 199 Thai ICC and HCC patients through systems integration of genomics, transcriptomics, and metabolomics. While ICC and HCC share recurrently mutated genes, including TP53, ARID1A, and ARID2, mitotic checkpoint anomalies distinguish the C1 subtype with key drivers PLK1 and ECT2, whereas the C2 subtype is linked to obesity, T cell infiltration, and bile acid metabolism. These molecular subtypes are found in 582 Asian, but less so in 265 Caucasian patients. Thus, Asian ICC and HCC, while clinically treated as separate entities, share common molecular subtypes with similar actionable drivers to improve precision therapy.

SUBMITTER: Chaisaingmongkol J 

PROVIDER: S-EPMC5524207 | biostudies-literature | 2017 Jul

REPOSITORIES: biostudies-literature

altmetric image

Publications

Common Molecular Subtypes Among Asian Hepatocellular Carcinoma and Cholangiocarcinoma.

Chaisaingmongkol Jittiporn J   Budhu Anuradha A   Dang Hien H   Rabibhadana Siritida S   Pupacdi Benjarath B   Kwon So Mee SM   Forgues Marshonna M   Pomyen Yotsawat Y   Bhudhisawasdi Vajarabhongsa V   Lertprasertsuke Nirush N   Chotirosniramit Anon A   Pairojkul Chawalit C   Auewarakul Chirayu U CU   Sricharunrat Thaniya T   Phornphutkul Kannika K   Sangrajrang Suleeporn S   Cam Maggie M   He Ping P   Hewitt Stephen M SM   Ylaya Kris K   Wu Xiaolin X   Andersen Jesper B JB   Thorgeirsson Snorri S SS   Waterfall Joshua J JJ   Zhu Yuelin J YJ   Walling Jennifer J   Stevenson Holly S HS   Edelman Daniel D   Meltzer Paul S PS   Loffredo Christopher A CA   Hama Natsuko N   Shibata Tatsuhiro T   Wiltrout Robert H RH   Harris Curtis C CC   Mahidol Chulabhorn C   Ruchirawat Mathuros M   Wang Xin W XW  

Cancer cell 20170622 1


Intrahepatic cholangiocarcinoma (ICC) and hepatocellular carcinoma (HCC) are clinically disparate primary liver cancers with etiological and biological heterogeneity. We identified common molecular subtypes linked to similar prognosis among 199 Thai ICC and HCC patients through systems integration of genomics, transcriptomics, and metabolomics. While ICC and HCC share recurrently mutated genes, including TP53, ARID1A, and ARID2, mitotic checkpoint anomalies distinguish the C1 subtype with key dr  ...[more]

Similar Datasets

| S-DIXA-D-1002 | biostudies-other
2009-09-17 | E-GEOD-10393 | biostudies-arrayexpress
2009-09-08 | E-GEOD-10186 | biostudies-arrayexpress
2009-09-08 | GSE10186 | GEO
2009-09-08 | GSE10393 | GEO
| S-EPMC8187378 | biostudies-literature
| S-EPMC8317046 | biostudies-literature
| S-EPMC8269161 | biostudies-literature
| S-EPMC3577770 | biostudies-literature
| PRJNA743855 | ENA