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Pediatric Sarcoma Data Forms a Unique Cluster Measured via the Earth Mover's Distance.

ABSTRACT: In this note, we combined pediatric sarcoma data from Columbia University with adult sarcoma data collected from TCGA, in order to see if one can automatically discern a unique pediatric cluster in the combined data set. Using a novel clustering pipeline based on optimal transport theory, this turned out to be the case. The overall methodology may find uses for the classification of data from other biological networking problems.

SUBMITTER: Chen Y

PROVIDER: S-EPMC5539155 | biostudies-literature | 2017 Aug

REPOSITORIES: biostudies-literature

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Pediatric Sarcoma Data Forms a Unique Cluster Measured via the Earth Mover's Distance.

Chen Yongxin Y Cruz Filemon Dela FD Sandhu Romeil R Kung Andrew L AL Mundi Prabhjot P Deasy Joseph O JO Tannenbaum Allen A

Scientific reports 20170801 1

In this note, we combined pediatric sarcoma data from Columbia University with adult sarcoma data collected from TCGA, in order to see if one can automatically discern a unique pediatric cluster in the combined data set. Using a novel clustering pipeline based on optimal transport theory, this turned out to be the case. The overall methodology may find uses for the classification of data from other biological networking problems. ...[more]

PMID: 28765612

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