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Detecting and characterizing mixed infections with genetic variants of Anaplasma phagocytophilum in roe deer (Capreolus capreolus) by developing an ankA cluster-specific nested PCR.

ABSTRACT: Anaplasma phagocytophilum is a tick-transmitted Gram-negative obligate intracellular bacterium able to infect a wide variety of wild and domestic animals worldwide. Based on the genetic diversity observed with different molecular markers, several host-specific lineages have been identified. Roe deer is one of the most important reservoirs of this bacterium and hosts different genetic groups sometimes found on domestic animals. We therefore developed an ankA cluster-specific nested PCR (nPCR) to evaluate the prevalence of the three different ankA genetic groups described in roe deer (clusters II, III and IV) at three locations in France and the level of co-infections.The specificity of the three nPCRs was assessed by partially sequencing 35 amplicons of ankA genes obtained from the different nested PCRs. All three genetic lineages were detected in roe deer from all three geographical locations. Of the infected deer population, 60.7% were co-infected by two or three different genetic variants. Co-infections varied from 42.9 to 70.6% of the infected population depending on the local infection prevalences (from 33.3 to 73.9%). All types of mixed infections occurred, suggesting the absence of a strict variant exclusion by another variant.Mixed infections by two or three genetic variants of A. phagocytopilum are a common feature in roe deer. Genetic variants (cluster IV) also found in domestic ruminants (cattle and sheep) were present in all the roe deer populations analyzed, suggesting a shared epidemiological cycle.

SUBMITTER: Jouglin M

PROVIDER: S-EPMC5547487 | biostudies-literature | 2017 Aug

REPOSITORIES: biostudies-literature

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Detecting and characterizing mixed infections with genetic variants of Anaplasma phagocytophilum in roe deer (Capreolus capreolus) by developing an ankA cluster-specific nested PCR.

Jouglin Maggy M Chagneau Sophie S Faille Frédéric F Verheyden Hélène H Bastian Suzanne S Malandrin Laurence L

Parasites & vectors 20170807 1

<h4>Background</h4>Anaplasma phagocytophilum is a tick-transmitted Gram-negative obligate intracellular bacterium able to infect a wide variety of wild and domestic animals worldwide. Based on the genetic diversity observed with different molecular markers, several host-specific lineages have been identified. Roe deer is one of the most important reservoirs of this bacterium and hosts different genetic groups sometimes found on domestic animals. We therefore developed an ankA cluster-specific ne ...[more]

PMID: 28784148

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Project description:Background. Understanding species distribution, especially areas of overlapping habitat between sympatric species, is essential for informing conservation through natural habitat protection. New protection strategies should simultaneously consider conservation efforts for multiple species that exist within the same landscape, which requires studies that include habitat overlap analysis. Methods. We estimated the potential habitat of cervids, which are typical ungulates in northern China, using the present locations of red deer (Cervus elaphus; N = 90) and roe deer (Capreolus capreolus; N = 106) in a Maximum Entropy (MaxEnt) model. Our study area was a human-dominated landscape in the Tieli Forestry Bureau located at the southern slope of the Lesser Xing'an Mountains. We grouped 17 environmental predictor variables into five predictor classes (terrain, habitat accessibility, land cover, vegetation feature, and interference), which were used to build habitat suitability models. Results. Habitat accessibility and human interferences were found to have the strongest influence on habitat suitability among the five variable classes. Among the environmental factors, distance to farmland (26.8%), distance to bush-grass land (14.6%), elevation (13.5%), and distance to water source (12.2%) were most important for red deer, distance to farmland (22.9%), distance to settlement (21.4%), elevation (11.6%), and coverage of shrub-grass (8%) were most important for roe deer. Model accuracy was high for both species (mean area under the curve (AUC) = 0.936 for red deer and 0.924 for roe deer). The overlapping habitat comprised 89.93 km(2) within the study area, which occupied 94% of potentially suitable habitat for red deer and 27% for roe deer. Conclusions. In terms of habitat suitability, roe deer showed greater selectivity than red deer. The overlapping habitat was mostly located in the eastern mountains. The southwestern plain was not a suitable habitat for deer because it was close to Tieli City. Regarding management measures, we suggest that priority protection should be given to the potential areas of overlapping deer habitats found in this study.

Dataset Information

Detecting and characterizing mixed infections with genetic variants of Anaplasma phagocytophilum in roe deer (Capreolus capreolus) by developing an ankA cluster-specific nested PCR.

Publications

Detecting and characterizing mixed infections with genetic variants of Anaplasma phagocytophilum in roe deer (Capreolus capreolus) by developing an ankA cluster-specific nested PCR.

Similar Datasets

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