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Exploiting opportunistic observations to estimate changes in seasonal site use: An example with wetland birds.

ABSTRACT: Nonsystematically collected, a.k.a. opportunistic, species observations are accumulating at a high rate in biodiversity databases. Occupancy models have arisen as the main tool to reduce effects of limited knowledge about effort in analyses of opportunistic data. These models are generally using long closure periods (e.g., breeding season) for the estimation of probability of detection and occurrence. Here, we use the fact that multiple opportunistic observations in biodiversity databases may be available even within days (e.g., at popular birding localities) to reduce the closure period to 1 day in order to estimate daily occupancies within the breeding season. We use a hierarchical dynamic occupancy model for daily visits to analyze opportunistic observations of 71 species from nine wetlands during 10 years. Our model derives measures of seasonal site use within seasons from estimates of daily occupancy. Comparing results from our "seasonal site use model" to results from a traditional annual occupancy model (using a closure criterion of 2 months or more) showed that our model provides more detailed biologically relevant information. For example, when the aim is to analyze occurrences of breeding species, an annual occupancy model will over-estimate site use of species with temporary occurrences (e.g., migrants passing by, single itinerary prospecting individuals) as even a single observation during the closure period will be viewed as an occupancy. Alternatively, our model produces estimates of the extent to which sites are actually used. Model validation based on simulated data confirmed that our model is robust to changes and variability in sampling effort and species detectability. We conclude that more information can be gained from opportunistic data with multiple replicates (e.g., several reports per day almost every day) by reducing the time window of the closure criterion to acquire estimates of occupancies within seasons.

SUBMITTER: Ruete A

PROVIDER: S-EPMC5551100 | biostudies-literature | 2017 Aug

REPOSITORIES: biostudies-literature

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Exploiting opportunistic observations to estimate changes in seasonal site use: An example with wetland birds.

Ruete Alejandro A Pärt Tomas T Berg Åke Å Knape Jonas J

Ecology and evolution 20170615 15

Nonsystematically collected, a.k.a. opportunistic, species observations are accumulating at a high rate in biodiversity databases. Occupancy models have arisen as the main tool to reduce effects of limited knowledge about effort in analyses of opportunistic data. These models are generally using long closure periods (e.g., breeding season) for the estimation of probability of detection and occurrence. Here, we use the fact that multiple opportunistic observations in biodiversity databases may be ...[more]

PMID: 28808543

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Project description:BackgroundBecause of its status as an ecocivilization pilot city, fundamental research on spatial distribution patterns and impact factors of the avian community within the Xiong'an New Area is necessary for future ecological planning and mitigation of negative impacts from future urbanization. Gradient research within small cities can provide important information for the development of urbanization gradient patterns of avian communities.MethodsA total of 30 sample points within the urbanization gradient were selected, and avian communities and environmental variables were measured within a 50 m radius sample circle. Principal component regression analysis was used to analyze bird-environment relationships. The Sorensen dissimilarity index was used to calculate the beta-diversity.ResultsOur results showed that there was a significant urban-rural pattern with a gradient phenomenon in avian communities. Results of this study showed more resident, passenger and insectivore species, and a higher density of breeding insectivore and omnivore individuals appear in the urban fringe than in the other areas. A relatively high value of overall beta-diversity and spatial isolation probably exists among the three disjunct constructed regions. Both species richness and individual abundance were significantly influenced by the species diversity of the trees and foliage height diversity (FHD).DiscussionBased on our results and our goal of avian species diversity conservation, we first suggest that urban green spaces be established and ensure a high complexity of vegetation structure as this is critically needed to increase avian species ?-diversity within habitat patches. Second, different habitat types within and around the three constructed areas should be developed based on the important existing bird habitats to increase avian diversity in each city, especially in the areas within Xiongxian and Rongcheng that are well protected, and to elevate the beta-diversity of the total region. Finally, based on the biodiversity hotspots identified by this research, ecological corridors should be carefully planned to improve the stability of regional bird communities.

Dataset Information

Exploiting opportunistic observations to estimate changes in seasonal site use: An example with wetland birds.

Publications

Exploiting opportunistic observations to estimate changes in seasonal site use: An example with wetland birds.

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