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Molecular dynamics for linear polymer melts in bulk and confined systems under shear flow.

ABSTRACT: In this work, we analyzed the individual chain dynamics for linear polymer melts under shear flow for bulk and confined systems using atomistic nonequilibrium molecular dynamics simulations of unentangled (C50H102) and slightly entangled (C178H358) polyethylene melts. While a certain similarity appears for the bulk and confined systems for the dynamic mechanisms of polymer chains in response to the imposed flow field, the interfacial chain dynamics near the boundary solid walls in the confined system are significantly different from the corresponding bulk chain dynamics. Detailed molecular-level analysis of the individual chain motions in a wide range of flow strengths are carried out to characterize the intrinsic molecular mechanisms of the bulk and interfacial chains in three flow regimes (weak, intermediate, and strong). These mechanisms essentially underlie various macroscopic structural and rheological properties of polymer systems, such as the mean-square chain end-to-end distance, probability distribution of the chain end-to-end distance, viscosity, and the first normal stress coefficient. Further analysis based on the mesoscopic Brightness method provides additional structural information about the polymer chains in association with their molecular mechanisms.

SUBMITTER: Cho S

PROVIDER: S-EPMC5567124 | biostudies-literature | 2017 Aug

REPOSITORIES: biostudies-literature

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Molecular dynamics for linear polymer melts in bulk and confined systems under shear flow.

Cho Soowon S Jeong Sohdam S Kim Jun Mo JM Baig Chunggi C

Scientific reports 20170821 1

In this work, we analyzed the individual chain dynamics for linear polymer melts under shear flow for bulk and confined systems using atomistic nonequilibrium molecular dynamics simulations of unentangled (C50H102) and slightly entangled (C178H358) polyethylene melts. While a certain similarity appears for the bulk and confined systems for the dynamic mechanisms of polymer chains in response to the imposed flow field, the interfacial chain dynamics nea ...[more]

PMID: 28827615

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Project description:We present a detailed analysis of the interfacial chain structure and dynamics of confined polymer melt systems under shear over a wide range of flow strengths using atomistic nonequilibrium molecular dynamics simulations, paying particular attention to the rheological influence of the closed-loop ring geometry and short-chain branching. We analyzed the interfacial slip, characteristic molecular mechanisms, and deformed chain conformations in response to the applied flow for linear, ring, short-chain branched (SCB) linear, and SCB ring polyethylene melts. The ring topology generally enlarges the interfacial chain dimension along the neutral direction, enhancing the dynamic friction of interfacial chains moving against the wall in the flow direction. This leads to a relatively smaller degree of slip (ds) for the ring-shaped polymers compared with their linear analogues. Furthermore, short-chain branching generally resulted in more compact and less deformed chain structures via the intrinsically fast random motions of the short branches. The short branches tend to be oriented more perpendicular (i.e., aligned in the neutral direction) than parallel to the backbone, which is mostly aligned in the flow direction, thereby enhancing the dynamic wall friction of the moving interfacial chains toward the flow direction. These features afford a relatively lower ds and less variation in ds in the weak-to-intermediate flow regimes. Accordingly, the interfacial SCB ring system displayed the lowest ds among the studied polymer systems throughout these regimes owing to the synergetic effects of ring geometry and short-chain branching. On the contrary, the structural disturbance exerted by the highly mobile short branches promotes the detachment of interfacial chains from the wall at strong flow fields, which results in steeper increasing behavior of the interfacial slip for the SCB polymers in the strong flow regime compared to the pure linear and ring polymers.

Project description:We present results for the steady state shear rheology of non-concatenated, unentangled and marginally entangled ring poly(ethylene oxide) (PEO) melts from detailed, atomistic nonequilibrium molecular dynamics (NEMD) simulations, and compare them to the behavior of the corresponding linear melts. The applied flow field spans a wide range of shear rates, from the linear (Newtonian) to the highly non-linear (described by a power law) regime. For all melts studied, rings are found to exhibit shear thinning but to a lesser degree compared to linear counterparts, mostly due to their reduced deformability and stronger resistance to alignment in the direction of flow. These features are attributed to the more compact structure of ring molecules compared to linear chains; the latter are capable of adopting wider and more open conformations even under shear due to the freedom provided by the free ends. Similar to linear melts, rings also exhibit a first and a second normal stress coefficient; the latter is negative. The ratio of the magnitude of the two coefficients remains practically constant with shear rate and is systematically higher than the corresponding one for linear melts. Emphasis was also given to the statistics of terminal (re-orientational) relaxation times which we computed by analyzing all chains in the simulated systems one by one; it was demonstrated that long time dynamics are strongly heterogeneous both for rings and (especially) linears. Repeating the analysis under flow conditions, and as expected, we found that the applied flow field significantly suppresses dynamic heterogeneity, especially for high shear rates well beyond the Newtonian plateau. Finally, a detailed geometrical analysis revealed that the average population of ring-ring threading events in the longest melt studied here (the PEO-5k ring) remains practically unaffected by the imposed flow rate even at strong shear rates, except for multi-threadings which disappear. To further analyze this peculiar and rather unexpected effect, we computed the corresponding survival times and penetration lengths, and found that the overwhelming majority of threadings under shear are extremely weak constraints, as they are characterized by very small penetration lengths, thus also by short survival times. They are expected therefore to play only a minor (if any) role on chain dynamics.

Project description:In this work, we compared the dynamics of motion in a linear shear flow of individual red blood cells (RBCs) from healthy and pathological donors (Sickle Cell Disease (SCD) or Sickle Cell-β-thalassemia) and of low and high densities, in a suspending medium of higher viscosity. In these conditions, at lower shear rates, biconcave discocyte-shaped RBCs present an unsteady flip-flopping motion, where the cell axis of symmetry rotates in the shear plane, rocking to and fro between an orbital angle ±ϕ observed when the cell is on its edge. We show that the evolution of ϕ depends solely on RBC density for healthy RBCs, with denser RBCs displaying lower ϕ values than the lighter ones. Typically, at a shear stress of 0.08 Pa, ϕ has values of 82 and 72° for RBCs with average densities of 1.097 and 1.115, respectively. Surprisingly, we show that SCD RBCs display the same ϕ-evolution as healthy RBCs of same density, showing that the flip-flopping behavior is unaffected by the SCD pathology. When the shear stress is increased further (above 0.1 Pa), healthy RBCs start going through a transition to a fluid-like motion, called tank-treading, where the RBC has a quasi-constant orientation relatively to the flow and the membrane rotates around the center of mass of the cell. This transition occurs at higher shear stresses (above 0.2 Pa) for denser cells. This shift toward higher stresses is even more remarkable in the case of SCD RBCs, showing that the transition to the tank-treading regime is highly dependent on the SCD pathology. Indeed, at a shear stress of 0.2 Pa, for RBCs with a density of 1.097, 100% of healthy RBCs have transited to the tank-treading regime vs. less than 50% SCD RBCs. We correlate the observed differences in dynamics to the alterations of RBC mechanical properties with regard to density and SCD pathology reported in the literature. Our results suggest that it might be possible to develop simple non-invasive assays for diagnosis purpose based on the RBC motion in shear flow and relying on this millifluidic approach.

Dataset Information

Molecular dynamics for linear polymer melts in bulk and confined systems under shear flow.

Publications

Molecular dynamics for linear polymer melts in bulk and confined systems under shear flow.

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