Input data for mathematical modeling and numerical simulation of switched reluctance machines.
Ontology highlight
ABSTRACT:
SUBMITTER: Memon AA
PROVIDER: S-EPMC5567386 | biostudies-literature | 2017 Oct
REPOSITORIES: biostudies-literature
Publications
Input data for mathematical modeling and numerical simulation of switched reluctance machines.
Memon Ali Asghar AA Shaikh Muhammad Mujtaba MM
Data in brief 20170720
The modeling and simulation of Switched Reluctance (SR) machine and drives is challenging for its dual pole salient structure and magnetic saturation. This paper presents the input data in form of experimentally obtained magnetization characteristics. This data was used for computer simulation based model of SR machine, "Selecting Best Interpolation Technique for Simulation Modeling of Switched Reluctance Machine" [1], "Modeling of Static Characteristics of Switched Reluctance Motor" [2]. This d ...[more]
Similar Datasets
Project description:Trypanosome RNA polymerase II transcription is polycistronic, individual mRNAs being excised by trans splicing and polyadenylation. In this study, we refined the previously published mathematical model for bloodstream form parasites and extended it to the procyclic form. We used the model, together with known mRNA half-lives, to predict the abundances of individual mRNAs, assuming rapid, unregulated mRNA processing; then we compared the results with measured mRNA abundances. Remarkably, the abundances of most mRNAs in procyclic forms are predicted quite well by the model, being largely explained by variations in mRNA decay rates and length. In bloodstream forms substantially more mRNAs are less abundant than predicted. We list mRNAs that are likely to show particularly slow or inefficient processing, either in both forms or with developmental regulation. We also measured ribosome occupancies of all mRNAs in trypanosomes grown in the same conditions as were used to measure mRNA turnover. In procyclic forms there was a weak positive correlation between ribosome density and mRNA half-life, suggesting cross-talk between translation and mRNA decay; ribosome density was related to the proportion of the mRNA on polysomes, indicating control of translation initiation. Ribosomal protein mRNAs in procyclics appeared to be exceptionally rapidly processed but poorly translated. Through this study, we conclude that lLevels of mRNAs in procyclic form trypanosomes are determined mainly by length and mRNA decay, with some control of precursor processing. In bloodstream forms variations in nuclear events play a larger role in transcriptome regulation, suggesting acquisition of new control mechanisms during adaptation to mammalian parasitism. Ribosome profiling and mRNA libraries were constructed in triplicate from in vitro PCF and in duplicate from in vitro T. brucei Lister427, to understand global differntial gene transcription.
2016-03-16 | E-GEOD-79208 | biostudies-arrayexpress
Project description:BACKGROUND: Higher plants and algae are able to fix atmospheric carbon dioxide through photosynthesis and store this fixed carbon in large quantities as starch, which can be hydrolyzed into sugars serving as feedstock for fermentation to biofuels and precursors. Rational engineering of carbon flow in plant cells requires a greater understanding of how starch breakdown fluxes respond to variations in enzyme concentrations, kinetic parameters, and metabolite concentrations. We have therefore developed and simulated a detailed kinetic ordinary differential equation model of the degradation pathways for starch synthesized in plants and green algae, which to our knowledge is the most complete such model reported to date. RESULTS: Simulation with 9 internal metabolites and 8 external metabolites, the concentrations of the latter fixed at reasonable biochemical values, leads to a single reference solution showing ?-amylase activity to be the rate-limiting step in carbon flow from starch degradation. Additionally, the response coefficients for stromal glucose to the glucose transporter k(cat) and KM are substantial, whereas those for cytosolic glucose are not, consistent with a kinetic bottleneck due to transport. Response coefficient norms show stromal maltopentaose and cytosolic glucosylated arabinogalactan to be the most and least globally sensitive metabolites, respectively, and ?-amylase k(cat) and KM for starch to be the kinetic parameters with the largest aggregate effect on metabolite concentrations as a whole. The latter kinetic parameters, together with those for glucose transport, have the greatest effect on stromal glucose, which is a precursor for biofuel synthetic pathways. Exploration of the steady-state solution space with respect to concentrations of 6 external metabolites and 8 dynamic metabolite concentrations show that stromal metabolism is strongly coupled to starch levels, and that transport between compartments serves to lower coupling between metabolic subsystems in different compartments. CONCLUSIONS: We find that in the reference steady state, starch cleavage is the most significant determinant of carbon flux, with turnover of oligosaccharides playing a secondary role. Independence of stationary point with respect to initial dynamic variable values confirms a unique stationary point in the phase space of dynamically varying concentrations of the model network. Stromal maltooligosaccharide metabolism was highly coupled to the available starch concentration. From the most highly converged trajectories, distances between unique fixed points of phase spaces show that cytosolic maltose levels depend on the total concentrations of arabinogalactan and glucose present in the cytosol. In addition, cellular compartmentalization serves to dampen much, but not all, of the effects of one subnetwork on another, such that kinetic modeling of single compartments would likely capture most dynamics that are fast on the timescale of the transport reactions.
| S-EPMC3148208 | biostudies-literature
Project description:Trypanosome RNA polymerase II transcription is polycistronic, individual mRNAs being excised by trans splicing and polyadenylation. In this study, we refined the previously published mathematical model for bloodstream form parasites and extended it to the procyclic form. We used the model, together with known mRNA half-lives, to predict the abundances of individual mRNAs, assuming rapid, unregulated mRNA processing; then we compared the results with measured mRNA abundances. Remarkably, the abundances of most mRNAs in procyclic forms are predicted quite well by the model, being largely explained by variations in mRNA decay rates and length. In bloodstream forms substantially more mRNAs are less abundant than predicted. We list mRNAs that are likely to show particularly slow or inefficient processing, either in both forms or with developmental regulation. We also measured ribosome occupancies of all mRNAs in trypanosomes grown in the same conditions as were used to measure mRNA turnover. In procyclic forms there was a weak positive correlation between ribosome density and mRNA half-life, suggesting cross-talk between translation and mRNA decay; ribosome density was related to the proportion of the mRNA on polysomes, indicating control of translation initiation. Ribosomal protein mRNAs in procyclics appeared to be exceptionally rapidly processed but poorly translated. Through this study, we conclude that lLevels of mRNAs in procyclic form trypanosomes are determined mainly by length and mRNA decay, with some control of precursor processing. In bloodstream forms variations in nuclear events play a larger role in transcriptome regulation, suggesting acquisition of new control mechanisms during adaptation to mammalian parasitism.
2016-03-16 | GSE79208 | GEO
Project description:The purpose of this work is to simulate the powder compaction of refractory materials, using the discrete element method (DEM). The capability of two cohesive contact models, implemented in different DEM packages, to simulate the compaction of a mixture of two refractory materials (dead burnt magnesia (MgO) and calcined alumina (Al2O3)) was analyzed, and the simulation results were compared with experimental data. The maximum force applied by the punch and the porosity and final shape quality of the compact were examined. As a starting point, the influence of Young's modulus (E), the cohesion energy density (CED), and the diameter of the Al2O3 particles (D) on the results was analyzed. This analysis allowed to distinguish that E and CED were the most influential factors. Therefore, a more extensive examination of these two factors was performed afterward, using a fixed value of D. The analysis of the combined effect of these factors made it possible to calibrate the DEM models, and consequently, after this calibration, the compacts had an adequate final shape quality and the maximum force applied in the simulations matched with the experimental one. However, the porosity of the simulated compacts was higher than that of the real ones. To reduce the porosity of the compacts, lower values of D were also modeled. Consequently, the relative deviation of the porosity was reduced from 40-50% to 20%, using a value of D equal to 0.15 mm.
| S-EPMC6982119 | biostudies-literature
Project description:Simulation data are presented for identifying and analysing the dynamic properties of the rainbow metamaterials as presented in the articles "Rainbow metamaterials for broadband multi-frequency vibration attenuation: numerical analysis and experimental validation" (Meng et al., 2019 [1]) and "Optimal design of rainbow elastic metamaterials" (Meng et al., 2019 [2]). In this data article, the frequency response functions and mode shapes of the rainbow metamaterials are numerically calculated by Finite Element models set up in Ansys Mechanical APDL. Harmonic analysis was performed to figure out the receptance function values of the rainbow metamaterials within the frequency regime 0-500 Hz. Modal analysis was applied to estimate the mode shapes, which could be used to explain the critical peaks and dips in the receptance function curve. Source files of Finite Element models are provided in the data. The Finite Element simulation is not only an effective alternative way to estimate the dynamic properties of the rainbow metamaterials, the mode shape analysis, which is unlikely to be achieved with the analytical model, provides direct insights into the underlying vibration mechanism of the rainbow metamaterials.
| S-EPMC6909204 | biostudies-literature
Project description:Empirical tsunami fragility curves are developed based on a Bayesian framework by accounting for uncertainty of input tsunami hazard data in a systematic and comprehensive manner. Three fragility modeling approaches, i.e. lognormal method, binomial logistic method, and multinomial logistic method, are considered, and are applied to extensive tsunami damage data for the 2011 Tohoku earthquake. A unique aspect of this study is that uncertainty of tsunami inundation data (i.e. input hazard data in fragility modeling) is quantified by comparing two tsunami inundation/run-up datasets (one by the Ministry of Land, Infrastructure, and Transportation of the Japanese Government and the other by the Tohoku Tsunami Joint Survey group) and is then propagated through Bayesian statistical methods to assess the effects on the tsunami fragility models. The systematic implementation of the data and methods facilitates the quantitative comparison of tsunami fragility models under different assumptions. Such comparison shows that the binomial logistic method with un-binned data is preferred among the considered models; nevertheless, further investigations related to multinomial logistic regression with un-binned data are required. Finally, the developed tsunami fragility functions are integrated with building damage-loss models to investigate the influences of different tsunami fragility curves on tsunami loss estimation. Numerical results indicate that the uncertainty of input tsunami data is not negligible (coefficient of variation of 0.25) and that neglecting the input data uncertainty leads to overestimation of the model uncertainty.
| S-EPMC6979541 | biostudies-literature
Project description:In this study we present a kinematic approach for modeling needle insertion into soft tissues. The kinematic approach allows the presentation of the problem as Dirichlet-type (i.e. driven by enforced motion of boundaries) and therefore weakly sensitive to unknown properties of the tissues and needle-tissue interaction. The parameters used in the kinematic approach are straightforward to determine from images. Our method uses Meshless Total Lagrangian Explicit Dynamics (MTLED) method to compute soft tissue deformations. The proposed scheme was validated against experiments of needle insertion into silicone gel samples. We also present a simulation of needle insertion into the brain demonstrating the method's insensitivity to assumed mechanical properties of tissue.
| S-EPMC7755224 | biostudies-literature
Project description:Count data, or number of events per time interval, are discrete data arising from repeated time to event observations. Their mean count, or piecewise constant event rate, can be evaluated by discrete probability distributions from the Poisson model family. Clinical trial data characterization often involves population count analysis. This tutorial presents the basics and diagnostics of count modeling and simulation in the context of pharmacometrics. Consideration is given to overdispersion, underdispersion, autocorrelation, and inhomogeneity.
| S-EPMC4150925 | biostudies-literature
Project description:New approaches to ovarian stimulation protocols, such as luteal start, random start or double stimulation, allow for flexibility in ovarian stimulation at different phases of the menstrual cycle. It has been proposed that the success of these methods is based on the continuous growth of multiple cohorts ("waves") of follicles throughout the menstrual cycle which leads to the availability of ovarian follicles for ovarian controlled stimulation at several time points. Though several preliminary studies have been published, their scientific evidence has not been considered as being strong enough to integrate these results into routine clinical practice. This work aims at adding further scientific evidence about the efficiency of variable-start protocols and underpinning the theory of follicular waves by using mathematical modeling and numerical simulations. For this purpose, we have modified and coupled two previously published models, one describing the time course of hormones and one describing competitive follicular growth in a normal menstrual cycle. The coupled model is used to test ovarian stimulation protocols in silico. Simulation results show the occurrence of follicles in a wave-like manner during a normal menstrual cycle and qualitatively predict the outcome of ovarian stimulation initiated at different time points of the menstrual cycle.
| S-EPMC8006380 | biostudies-literature
Project description:This dataset presents the thermal performance of building-integrated flat solar collectors with a uniform and multiple riser structure. The input data of the numerical model were obtained with the use of the PVGIS tool. Solar radiation and ambient temperature values at slopes 0°, 45°, and 90° were extracted and used as boundary conditions. Numerical calculations were carried using Finite Element (FE) analysis. Three-dimensional transient models were developed to calculate the investigated configurations’ thermal performance based on the environmental temperature, the solar radiation, and the inclination angle. The numerical model was validated with the use of an experimental data set showing a good agreement between the two models with RMSE of 5%. Data of hourly heat flux through the building masonry with the building-integrated solar collector and the average fluid temperature of each system is presented.
| S-EPMC8529080 | biostudies-literature