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Molecular markers in keratins from Mysticeti whales for species identification of baleen in museum and archaeological collections.

ABSTRACT: Baleen has been harvested by indigenous people for thousands of years, as well as collected by whalers as an additional product of commercial whaling in modern times. Baleen refers to the food-filtering system of Mysticeti whales; a full baleen rack consists of dozens of plates of a tough and flexible keratinous material that terminate in bristles. Due to its properties, baleen was a valuable raw material used in a wide range of artefacts, from implements to clothing. Baleen is not widely used today, however, analyses of this biomolecular tissue have the potential to contribute to conservation efforts, studies of genetic diversity and a better understanding of the exploitation and use of Mysticeti whales in past and recent times. Fortunately, baleen is present in abundance in museum natural history collections. However, it is often difficult or impossible to make a species identification of manufactured or old baleen. Here, we propose a new tool for biomolecular identification of baleen based on its main structural component alpha-keratin (the same protein that makes up hair and fingernails). With the exception of minke whales, alpha-keratin sequences are not yet known for baleen whales. We therefore used peptide mass fingerprinting to determine peptidic profiles in well documented baleen and evaluated the possibility of using this technique to differentiate species in baleen samples that are not adequately identified or are unidentified. We examined baleen from ten different species of whales and determined molecular markers for each species, including species-specific markers. In the case of the Bryde's whales, differences between specimens suggest distinct species or sub-species, consistent with the complex phylogeny of the species. Finally, the methodology was applied to 29 fragments of baleen excavated from archaeological sites in Labrador, Canada (representing 1500 years of whale use by prehistoric people), demonstrating a dominance of bowhead whale (Balaena mysticetus) in the archaeological assemblage and the successful application of the peptide mass fingerprinting technique to identify the species of whale in unidentified and partially degraded samples.

SUBMITTER: Solazzo C

PROVIDER: S-EPMC5576650 | biostudies-literature |

REPOSITORIES: biostudies-literature

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Project description:BackgroundAnatomical comparisons of the ear region of baleen whales (Mysticeti) are provided through detailed osteological descriptions and high-resolution photographs of the petrotympanic complex (tympanic bulla and petrosal bone) of all extant species of mysticete cetaceans. Salient morphological features are illustrated and identified, including overall shape of the bulla, size of the conical process of the bulla, morphology of the promontorium, and the size and shape of the anterior process of the petrosal. We place our comparative osteological observations into a phylogenetic context in order to initiate an exploration into petrotympanic evolution within Mysticeti.Principal findingsThe morphology of the petrotympanic complex is diagnostic for individual species of baleen whale (e.g., sigmoid and conical processes positioned at midline of bulla in Balaenoptera musculus; confluence of fenestra cochleae and perilymphatic foramen in Eschrichtius robustus), and several mysticete clades are united by derived characteristics. Balaenids and neobalaenids share derived features of the bulla, such as a rhomboid shape and a reduced anterior lobe (swelling) in ventral aspect, and eschrichtiids share derived morphologies of the petrosal with balaenopterids, including loss of a medial promontory groove and dorsomedial elongation of the promontorium. Monophyly of Balaenoidea (Balaenidae and Neobalaenidae) and Balaenopteroidea (Balaenopteridae and Eschrichtiidae) was recovered in phylogenetic analyses utilizing data exclusively from the petrotympanic complex.SignificanceThis study fills a major gap in our knowledge of the complex structures of the mysticete petrotympanic complex, which is an important anatomical region for the interpretation of the evolutionary history of mammals. In addition, we introduce a novel body of phylogenetically informative characters from the ear region of mysticetes. Our detailed anatomical descriptions, illustrations, and comparisons provide valuable data for current and future studies on the phylogenetic relationships, evolution, and auditory physiology of mysticetes and other cetaceans throughout Earth's history.

Project description:BackgroundThe previous species list of South African Mantodea, published in 1998, was largely compiled from the literature and did not incorporate data from the many insect museum collections available in the country. It is estimated that approximately 120 species of Mantodea occur in South Africa; however, since no historical museum records were previously incorporated, the current information is considered to be outdated and not a true reflection of the Mantodea fauna within this region. A checklist of species is an important benchmark for any insect group, especially in light of the worldwide declines of insect diversity reported over the last decade. Checklists that provide accurate information on insect diversity, especially for groups, such as the Mantodea which could be under threat and thus could provide important information that can be used in determining the threat status of species, as well as to aid in their conservation in general.New informationThis paper provides an updated checklist of the praying mantids (Insecta, Mantodea) species of South Africa. While 120 species were previously reported to occur in South Africa, this paper reports 157 species in 64 genera that represent eight different superfamilies, 14 families and 22 subfamilies. Additionally, five species are reported for the first time to occur in South Africa. This species list was generated from the approximately 4000 specimen records of which 3558 records reside within South Africa. The remaining 732 records represent 14 other African countries. Occurrence records from two citizen-science platforms (iNaturalist and Gbif.org), were also incorporated in this study, adding 1880 species records in South Africa. The low number of specimens in the national collections indicate that this group of insects is poorly collected and highlights the lack of knowledge about South Africa's mantid fauna, as well as a lack of taxonomic expertise as 1532 museum specimens remain unidentified to species level.

Project description:Background:Family Cetotheriidae sensu stricto and several closely related taxa comprise the Cetotherioidea and represent a lineage of Neogene baleen whales that includes the smallest edentulous baleen whales in Earth history. Most of known cetotheriids came from the Late Miocene to Quaternary, and the earliest records from the latest Middle Miocene. The Paratethys region shows a great diversity of Middle to Late Miocene cetotheriids. That includes nominative taxon of the family, Cetotherium rathkii, and this suggests that the earliest cetotheriids may have lived in that region. Materials and methods:Here, Ciuciulea davidi, a new genus and species from the Middle Miocene of southeastern Europe, is described as the chronologically earliest and earliest diverging member of Cetotheriidae. Also, a new specimen of Otradnocetus, a basal Cetotherioidea sensu Gol'din & Steeman, 2015 is identified from the Late Miocene deposits of Caucasus and compared with Otradnocetus virodovi from the Middle Miocene of the same region. Results and discussion:Ciuciulea davidi is a dwarf whale displaying primitive traits: posterior ends of facial bones forming a single transverse line, a narrow occipital shield, and a relatively long interparietal region. Meanwhile, it shares some cetotheriid apomorphies: posteriorly telescoped wedge-shaped facial bones and an ovoid tympanic bulla with shallow lateral and medial furrows, a short anterior lobe and a short sigmoid process. Phylogenetic analysis suggests that Parietobalaena and Otradnocetus are branches diverging before the clade Cetotheriidae + Neobalaenidae. This is confirmed by the stepwise evolution of the anatomy of the squamosal, mandible, and ear bones across these groups. The re-described juvenile specimen of Otradnocetus differs from O. virodovi in the more primitive anatomy of the mandible and the autapomorphic anatomy of the humerus. Records of the earliest cetotheriids and related taxa in the Paratethys support the idea that this could be the region where Cetotheriidae evolved before their worldwide dispersal and radiation.

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Molecular markers in keratins from Mysticeti whales for species identification of baleen in museum and archaeological collections.

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