Dataset Information

A Deep Learning-Based Radiomics Model for Prediction of Survival in Glioblastoma Multiforme.

ABSTRACT: Traditional radiomics models mainly rely on explicitly-designed handcrafted features from medical images. This paper aimed to investigate if deep features extracted via transfer learning can generate radiomics signatures for prediction of overall survival (OS) in patients with Glioblastoma Multiforme (GBM). This study comprised a discovery data set of 75 patients and an independent validation data set of 37 patients. A total of 1403 handcrafted features and 98304 deep features were extracted from preoperative multi-modality MR images. After feature selection, a six-deep-feature signature was constructed by using the least absolute shrinkage and selection operator (LASSO) Cox regression model. A radiomics nomogram was further presented by combining the signature and clinical risk factors such as age and Karnofsky Performance Score. Compared with traditional risk factors, the proposed signature achieved better performance for prediction of OS (C-index?=?0.710, 95% CI: 0.588, 0.932) and significant stratification of patients into prognostically distinct groups (P?

SUBMITTER: Lao J

PROVIDER: S-EPMC5583361 | biostudies-literature | 2017 Sep

REPOSITORIES: biostudies-literature

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A Deep Learning-Based Radiomics Model for Prediction of Survival in Glioblastoma Multiforme.

Lao Jiangwei J Chen Yinsheng Y Li Zhi-Cheng ZC Li Qihua Q Zhang Ji J Liu Jing J Zhai Guangtao G

Scientific reports 20170904 1

Traditional radiomics models mainly rely on explicitly-designed handcrafted features from medical images. This paper aimed to investigate if deep features extracted via transfer learning can generate radiomics signatures for prediction of overall survival (OS) in patients with Glioblastoma Multiforme (GBM). This study comprised a discovery data set of 75 patients and an independent validation data set of 37 patients. A total of 1403 handcrafted features and 98304 deep features were extracted fro ...[more]

PMID: 28871110

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Project description:PurposeMost radiomic studies use the features extracted from the manually drawn tumor contours for classification or survival prediction. However, large interobserver segmentation variations lead to inconsistent features and hence introduce more challenges in constructing robust prediction models. Here, we proposed an automatic workflow for glioblastoma (GBM) survival prediction based on multimodal magnetic resonance (MR) images.Methods and materialsTwo hundred eighty-five patients with glioma (210 GBM, 75 low-grade glioma) were included. One hundred sixty-three of the patients with GBM had overall survival data. Every patient had 4 preoperative MR images and manually drawn tumor contours. A 3-dimensional convolutional neural network, VGG-Seg, was trained and validated using 122 patients with glioma for automatic GBM segmentation. The trained VGG-Seg was applied to the remaining 163 patients with GBM to generate their autosegmented tumor contours. The handcrafted and deep learning (DL)-based radiomic features were extracted from the autosegmented contours using explicitly designed algorithms and a pretrained convolutional neural network, respectively. One hundred sixty-three patients with GBM were randomly split into training (n = 122) and testing (n = 41) sets for survival analysis. Cox regression models were trained to construct the handcrafted and DL-based signatures. The prognostic powers of the 2 signatures were evaluated and compared.ResultsThe VGG-Seg achieved a mean Dice coefficient of 0.86 across 163 patients with GBM for GBM segmentation. The handcrafted signature achieved a C-index of 0.64 (95% confidence interval, 0.55-0.73), whereas the DL-based signature achieved a C-index of 0.67 (95% confidence interval, 0.57-0.77). Unlike the handcrafted signature, the DL-based signature successfully stratified testing patients into 2 prognostically distinct groups.ConclusionsThe VGG-Seg generated accurate GBM contours from 4 MR images. The DL-based signature achieved a numerically higher C-index than the handcrafted signature and significant patient stratification. The proposed automatic workflow demonstrated the potential of improving patient stratification and survival prediction in patients with GBM.

Dataset Information

A Deep Learning-Based Radiomics Model for Prediction of Survival in Glioblastoma Multiforme.

Publications

A Deep Learning-Based Radiomics Model for Prediction of Survival in Glioblastoma Multiforme.

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