ABSTRACT: APC/?-catenin pathway malfunction is a common and early event in colorectal carcinogenesis. To assess calcium and vitamin D effects on the APC/?-catenin pathway in the normal-appearing colorectal mucosa of sporadic colorectal adenoma patients, nested within a larger randomized, double-blind, placebo-controlled, partial 2?×?2 factorial chemoprevention clinical trial of supplemental calcium (1200?mg daily) and vitamin D (1000 IU daily), alone and in combination versus placebo, we assessed APC, ?-catenin, and E-cadherin expression in colon crypts in normal-appearing rectal mucosa biopsies from 104 participants at baseline and 1-yr follow up using standardized, automated immunohistochemistry and quantitative image analysis. For vitamin D versus no vitamin D, the ratio of APC expression to ?-catenin expression in the upper 40% (differentiation zone) of crypts (APC/?-catenin score) increased by 28% (P?=?0.02), for calcium versus no calcium it increased by 1% (P?=?0.88), and for vitamin D?+?calcium versus calcium by 35% (P?=?0.01). Total E-cadherin expression increased by 7% (P?=?0.35) for vitamin D versus no vitamin D, 8% (P?=?0.31) for calcium versus no calcium, and 12% (P?=?0.21) for vitamin D?+?calcium versus calcium. These results support (i) that vitamin D, alone or in combination with calcium, may modify APC, ?-catenin, and E-cadherin expression in humans in directions hypothesized to reduce risk for colorectal neoplasms; (ii) vitamin D as a potential chemopreventive agent against colorectal neoplasms; and (iii) the potential of APC, ?-catenin, and E-cadherin expression as treatable, pre-neoplastic risk biomarkers for colorectal neoplasms. © 2016 Wiley Periodicals, Inc.