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Deep Sequencing Reveals a Divergent Ugandan cassava brown streak virus Isolate from Malawi.

ABSTRACT: Illumina sequencing of RNA from a cassava cutting from northern Malawi produced a genome of Ugandan cassava brown streak virus (UCBSV-MW-NB7_2013). Sequence comparisons revealed stronger similarity to an isolate from nearby Tanzania (93.4% pairwise nucleotide identity) than to those previously reported from Malawi (86.9 to 87.0%).

SUBMITTER: Mbewe W 

PROVIDER: S-EPMC5604781 | biostudies-literature | 2017 Aug

REPOSITORIES: biostudies-literature

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Deep Sequencing Reveals a Divergent <i>Ugandan cassava brown streak virus</i> Isolate from Malawi.

Mbewe Willard W   Winter Stephan S   Mukasa Settumba S   Tairo Fred F   Sseruwagi Peter P   Ndunguru Joseph J   Duffy Siobain S  

Genome announcements 20170817 33

Illumina sequencing of RNA from a cassava cutting from northern Malawi produced a genome of <i>Ugandan cassava brown streak virus</i> (UCBSV-MW-NB7_2013). Sequence comparisons revealed stronger similarity to an isolate from nearby Tanzania (93.4% pairwise nucleotide identity) than to those previously reported from Malawi (86.9 to 87.0%). ...[more]