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Viewing RNA-seq data on the entire human genome.

ABSTRACT: RNA-Seq Viewer is a web application that enables users to visualize genome-wide expression data from NCBI's Sequence Read Archive (SRA) and Gene Expression Omnibus (GEO) databases. The application prototype was created by a small team during a three-day hackathon facilitated by NCBI at Brandeis University. The backend data pipeline was developed and deployed on a shared AWS EC2 instance. Source code is available at https://github.com/NCBI-Hackathons/rnaseqview.

SUBMITTER: Weitz EM 

PROVIDER: S-EPMC5605993 | biostudies-literature | 2017

REPOSITORIES: biostudies-literature

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Viewing RNA-seq data on the entire human genome.

Weitz Eric M EM   Pantano Lorena L   Zhu Jingzhi J   Upton Bennett B   Busby Ben B  

F1000Research 20170428

RNA-Seq Viewer is a web application that enables users to visualize genome-wide expression data from NCBI's Sequence Read Archive (SRA) and Gene Expression Omnibus (GEO) databases. The application prototype was created by a small team during a three-day hackathon facilitated by NCBI at Brandeis University. The backend data pipeline was developed and deployed on a shared AWS EC2 instance. Source code is available at https://github.com/NCBI-Hackathons/rnaseqview. ...[more]

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