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Characterization of Methane Excess and Absolute Adsorption in Various Clay Nanopores from Molecular Simulation.

ABSTRACT: In this work, we use grand canonical Monte Carlo (GCMC) simulation to study methane adsorption in various clay nanopores and analyze different approaches to characterize the absolute adsorption. As an important constituent of shale, clay minerals can have significant amount of nanopores, which greatly contribute to the gas-in-place in shale. In previous works, absolute adsorption is often calculated from the excess adsorption and bulk liquid phase density of absorbate. We find that methane adsorbed phase density keeps increasing with pressure up to 80?MPa. Even with updated adsorbed phase density from GCMC, there is a significant error in absolute adsorption calculation. Thus, we propose to use the excess adsorption and adsorbed phase volume to calculate absolute adsorption and reduce the discrepancy to less than 3% at high pressure conditions. We also find that the supercritical Dubinin-Radushkevich (SDR) fitting method which is commonly used in experiments to convert the excess adsorption to absolute adsorption may not have a solid physical foundation for methane adsorption. The methane excess and absolute adsorptions per specific surface area are similar for different clay minerals in line with previous experimental data. In mesopores, the excess and absolute adsorptions per specific surface area become insensitive to pore size. Our work should provide important fundamental understandings and insights into accurate estimation of gas-in-place in shale reservoirs.

SUBMITTER: Tian Y

PROVIDER: S-EPMC5607345 | biostudies-literature | 2017 Sep

REPOSITORIES: biostudies-literature

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Characterization of Methane Excess and Absolute Adsorption in Various Clay Nanopores from Molecular Simulation.

Tian Yuanyuan Y Yan Changhui C Jin Zhehui Z

Scientific reports 20170920 1

In this work, we use grand canonical Monte Carlo (GCMC) simulation to study methane adsorption in various clay nanopores and analyze different approaches to characterize the absolute adsorption. As an important constituent of shale, clay minerals can have significant amount of nanopores, which greatly contribute to the gas-in-place in shale. In previous works, absolute adsorption is often calculated from the excess adsorption and bulk liquid phase density of absorbate. We find that methane adsor ...[more]

PMID: 28931873

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Project description:This Review explores the dynamic behavior of water within nanopores and biological channels in lipid bilayer membranes. We focus on molecular simulation studies, alongside selected structural and other experimental investigations. Structures of biological nanopores and channels are reviewed, emphasizing those high-resolution crystal structures, which reveal water molecules within the transmembrane pores, which can be used to aid the interpretation of simulation studies. Different levels of molecular simulations of water within nanopores are described, with a focus on molecular dynamics (MD). In particular, models of water for MD simulations are discussed in detail to provide an evaluation of their use in simulations of water in nanopores. Simulation studies of the behavior of water in idealized models of nanopores have revealed aspects of the organization and dynamics of nanoconfined water, including wetting/dewetting in narrow hydrophobic nanopores. A survey of simulation studies in a range of nonbiological nanopores is presented, including carbon nanotubes, synthetic nanopores, model peptide nanopores, track-etched nanopores in polymer membranes, and hydroxylated and functionalized nanoporous silica. These reveal a complex relationship between pore size/geometry, the nature of the pore lining, and rates of water transport. Wider nanopores with hydrophobic linings favor water flow whereas narrower hydrophobic pores may show dewetting. Simulation studies over the past decade of the behavior of water in a range of biological nanopores are described, including porins and ?-barrel protein nanopores, aquaporins and related polar solute pores, and a number of different classes of ion channels. Water is shown to play a key role in proton transport in biological channels and in hydrophobic gating of ion channels. An overall picture emerges, whereby the behavior of water in a nanopore may be predicted as a function of its hydrophobicity and radius. This informs our understanding of the functions of diverse channel structures and will aid the design of novel nanopores. Thus, our current level of understanding allows for the design of a nanopore which promotes wetting over dewetting or vice versa. However, to design a novel nanopore, which enables fast, selective, and gated flow of water de novo would remain challenging, suggesting a need for further detailed simulations alongside experimental evaluation of more complex nanopore systems.

Project description:The integration of local heat sources with solid-state nanopores offers new means for controlling the transmembrane transport of charged biomacromolecules. In the case of electrophoretic transport of DNA, recent experimental studies revealed unexpected temperature dependences of the DNA capture rate, the DNA translocation velocity, and the ionic current blockades produced by the presence of DNA in the nanopore. Here, we report the results of all-atom molecular dynamics simulations that elucidated the effect of temperature on the key microscopic processes governing electric field-driven transport of DNA through nanopores. Mimicking the experimental setup, we simulated the capture and subsequent translocation of short DNA duplexes through a locally heated nanopore at several temperatures and electrolyte conditions. The temperature dependence of ion mobility at the DNA surface was found to cause the dependence of the relative conductance blockades on temperature. To the first order, the effective force on DNA in the nanopore was found to be independent of temperature, despite a considerable reduction of solution viscosity. The temperature dependence of the solution viscosity was found to make DNA translocations faster for a uniformly heated system but not in the case of local heating that does not affect viscosity of solution surrounding the untranslocated part of the molecule. Increasing solution temperature was also found to reduce the lifetime of bonds formed between cations and DNA. Using a flow suppression algorithm, we were able to separate the effects of electro-osmotic flow and direct ion binding, finding the reduced durations of DNA-ion bonds to increase, albeit weakly, the effective force experienced by DNA in an electric field. Unexpectedly, our simulations revealed a considerable temperature dependence of solvent velocity at the DNA surface-slip velocity, an effect that can alter hydrodynamic coupling between the motion of DNA and the surrounding fluid.

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Characterization of Methane Excess and Absolute Adsorption in Various Clay Nanopores from Molecular Simulation.

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Characterization of Methane Excess and Absolute Adsorption in Various Clay Nanopores from Molecular Simulation.

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