Dataset Information

Comparative metagenomics approaches to characterize the soil fungal communities of western coastal region, Saudi Arabia.

ABSTRACT: A total of 145007 reads were obtained from pyrosequencing for all the 4 samples. The total count ranged from 11,301,014 (Mecca old road) to 23,503,512 bp (Thuwal). A total of 460 fungal species belonging to 133 genera, 58 families, 33 orders, 13 classes and 4 phyla was identified across the four sites. The most abundant phylum at all four sites was Ascomycota followed by Basidiomycota. Four phyla (Ascomycota-99.31%, Basidiomycota-0.59%, Chytridiomycota-0.04%, Glomeromycota-0.03%) were detected in Khulais. Except for Glomeromycota, all phyla were detected at Mecca old road (Ascomycota-74.26%, Basidiomycota-25.71%, Chytridiomycota-0.01%) and Thuwal (Ascomycota-99.59%, Basidiomycota-0.40%, Chytridiomycota-0.002%); while only Ascomycota-90.98% and Basidiomycota-9.01% were detected in Asfan road. At the class level, Sordariomycetes was predominantly observed at Asfan road-59.88%, Khulais-68.26% and Thuwal-94.84%; while Pezizomycetes was dominant at Mecca old road-56.01%, was absent at Asfan road. Agaricomycetes was present only at Mecca old road-25.73%; while Tremellomycetes-5.77%, Malasseizomycetes-2.13% and Microbotryomycetes-1.10% were found only at Asfan road. The phylogenetic trees revealed that clear genus level differences are visible across all the four sites, with an overall predominance of Thielavia followed by Madurella, Aspergillus, and Gelasinospora. Chaetomium sp., Aspergillus caespitosus and Aspergillus sp. were found in moderate (Mecca old road and Thuwal) to abundant (Asfan road and Khulais) quantities. Thielavia sp., Thielavia hyalocarpa and Madurella sp. are found in moderate quantities at Khulais and Mecca old road, while in abundant levels at Asfan road and Thuwal. Fusarium equisati and F. oxysporum were detected at Thuwal and Khulais. Sordaria araneosa was present at Khulais, while Malasseiza globosa species was detected in moderate quantities across all sites except Khulais.

SUBMITTER: Moussa TAA

PROVIDER: S-EPMC5608318 | biostudies-literature | 2017

REPOSITORIES: biostudies-literature

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Comparative metagenomics approaches to characterize the soil fungal communities of western coastal region, Saudi Arabia.

Moussa Tarek A A TAA Al-Zahrani Hassan S HS Almaghrabi Omar A OA Abdelmoneim Tamer S TS Fuller Michael P MP

PloS one 20170921 9

A total of 145007 reads were obtained from pyrosequencing for all the 4 samples. The total count ranged from 11,301,014 (Mecca old road) to 23,503,512 bp (Thuwal). A total of 460 fungal species belonging to 133 genera, 58 families, 33 orders, 13 classes and 4 phyla was identified across the four sites. The most abundant phylum at all four sites was Ascomycota followed by Basidiomycota. Four phyla (Ascomycota-99.31%, Basidiomycota-0.59%, Chytridiomycota-0.04%, Glomeromycota-0.03%) were detected i ...[more]

PMID: 28934322

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Project description:Sabkhas are unique, highly saline ecosystems, where specially adapted plants can grow. Aeluropus lagopoides (L.) Thwaites is a halophytic forage plant growing in salt marsh habitats of inland and coastal sabkhas of Saudi Arabia. The present study provides an analysis of vegetation composition and distribution of the A. lagopoides community in five different regions within Saudi Arabia, emphasizing the environmental factors that affect species distribution. The floristic survey revealed the presence of 48 species, belonging to 26 families. Poaceae, Chenopodiaceae, Mimosaceae, Zygophyllaceae, and Asteraceae are the largest families (50% of total species). Phanerophyte, followed by chamaephytes, are the most frequent forms, indicating a typical saline desert life-form spectrum. The vegetation analysis revealed the dominance of A. lagopoides in all locations, where it was the most dominant species in Qareenah, Qaseem, and Salwa locations, and the second most dominant species in Jouf and Jizan locations. The flourishment of this halophytic grass within a wide soil range in sabkhas revealed its adaptability to the harsh environment, which could be ascribed to its structural adaptations and modifications, as well as the phenotypic plasticity. The Qareenah and Qaseem locations attained the highest species richness and evenness, while the Jizan location was the least diverse. Within the studied locations, other highly salt-tolerant species were determined with high abundances, such as Suaeda aegyptiaca (Hasselq.) Zohary, Zygophyllum album L.f., Tamarix nilotica (Ehrenb.) Bunge, Cressa cretica L., and Salicornia europaea L. The soil analysis showed a significant variation for all parameters among the studied locations, except for pH, chloride, and clay content. The Qaseem location revealed the highest values of most soil parameters, while the Jizan location showed the lowest. The canonical correspondence analysis (CCA) showed that the community structure and diversity are mainly affected by the soil salinity and moisture. Due to the economic potentialities of A. lagopoides as a forage plant and sand stabilizer, the conservation of its habitats is of vital importance. In addition, this grass could be integrated as a promising forage candidate that can be planted in saline-affected areas, even in the summer dry season.

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Dataset Information

Comparative metagenomics approaches to characterize the soil fungal communities of western coastal region, Saudi Arabia.

Publications

Comparative metagenomics approaches to characterize the soil fungal communities of western coastal region, Saudi Arabia.

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