Unknown

Dataset Information

0

Compliance with minimum information guidelines in public metabolomics repositories.


ABSTRACT: The Metabolomics Standards Initiative (MSI) guidelines were first published in 2007. These guidelines provided reporting standards for all stages of metabolomics analysis: experimental design, biological context, chemical analysis and data processing. Since 2012, a series of public metabolomics databases and repositories, which accept the deposition of metabolomic datasets, have arisen. In this study, the compliance of 399 public data sets, from four major metabolomics data repositories, to the biological context MSI reporting standards was evaluated. None of the reporting standards were complied with in every publicly available study, although adherence rates varied greatly, from 0 to 97%. The plant minimum reporting standards were the most complied with and the microbial and in vitro were the least. Our results indicate the need for reassessment and revision of the existing MSI reporting standards.

SUBMITTER: Spicer RA 

PROVIDER: S-EPMC5613734 | biostudies-literature | 2017 Sep

REPOSITORIES: biostudies-literature

altmetric image

Publications

Compliance with minimum information guidelines in public metabolomics repositories.

Spicer Rachel A RA   Salek Reza R   Steinbeck Christoph C  

Scientific data 20170926


The Metabolomics Standards Initiative (MSI) guidelines were first published in 2007. These guidelines provided reporting standards for all stages of metabolomics analysis: experimental design, biological context, chemical analysis and data processing. Since 2012, a series of public metabolomics databases and repositories, which accept the deposition of metabolomic datasets, have arisen. In this study, the compliance of 399 public data sets, from four major metabolomics data repositories, to the  ...[more]

Similar Datasets

| S-EPMC5774126 | biostudies-literature
| S-EPMC9264741 | biostudies-literature
| S-EPMC10798454 | biostudies-literature
| S-EPMC7476965 | biostudies-literature
| S-EPMC7116434 | biostudies-literature
| S-EPMC9883827 | biostudies-literature
| S-EPMC9701651 | biostudies-literature
| S-EPMC4633238 | biostudies-literature
| S-EPMC8590194 | biostudies-literature
| S-EPMC7236120 | biostudies-literature