Dataset Information

Comparative Gene Mapping as a Tool to Understand the Evolution of Pest Crop Insect Chromosomes.

ABSTRACT: The extent of the conservation of synteny and gene order in aphids has been previously investigated only by comparing a small subset of linkage groups between the pea aphid Acyrthosiphon pisum and a few other aphid species. Here we compared the localization of eight A. pisum scaffolds (covering more than 5 Mb and 83 genes) in respect to the Drosophila melanogaster Muller elements identifying orthologous loci spanning all the four A. pisum chromosomes. Comparison of the genetic maps revealed a conserved synteny across different loci suggesting that the study of the fruit fly Muller elements could favour the identification of chromosomal markers useful for the study of chromosomal rearrangements in aphids. A. pisum is the first aphid species to have its genome sequenced and the finding that there are several chromosomal regions in synteny between Diptera and Hemiptera indicates that the genomic tools developed in A. pisum will be broadly useful not only for the study of other aphids but also for other insect species.

SUBMITTER: Mandrioli M

PROVIDER: S-EPMC5618568 | biostudies-literature | 2017 Sep

REPOSITORIES: biostudies-literature

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Comparative Gene Mapping as a Tool to Understand the Evolution of Pest Crop Insect Chromosomes.

Mandrioli Mauro M Zambonini Giada G Manicardi Gian Carlo GC

International journal of molecular sciences 20170907 9

The extent of the conservation of synteny and gene order in aphids has been previously investigated only by comparing a small subset of linkage groups between the pea aphid Acyrthosiphon pisum and a few other aphid species. Here we compared the localization of eight A. pisum scaffolds (covering more than 5 Mb and 83 genes) in respect to the Drosophila melanogaster Muller elements identifying orthologous loci spanning all the four A. pisum chromosomes. Comparison of th ...[more]

PMID: 28880213

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Project description:Ecological decision problems, such as those encountered in agriculture, often require managing conflicts between short-term costs and long-term benefits. Dynamic programming is an ideal method for optimally solving such problems but agricultural problems are often subject to additional complexities that produce state spaces intractable to exact solutions. In contrast, look-ahead policies, a class of approximate dynamic programming (ADP) algorithm, may attempt to solve problems of arbitrary magnitude. However, these algorithms focus on a temporally truncated caricature of the full decision problem over a defined planning horizon and as such are not guaranteed to suggest optimal actions. Thus, look-ahead policies may offer promising means of addressing detail-rich ecological decision problems but may not be capable of fully utilizing the information available to them, especially in scenarios where the best short- and long-term solutions may differ. We constructed and applied look-ahead policies to the management of a hypothetical, stage-structured, continually reproducing, agricultural insect pest. The management objective was to minimize the combined costs of management actions and crop damage over a 16-week growing season. The manager could elect to utilize insecticidal sprays or one of six release ratios of male-selecting transgenic insects where the release ratio determines the number of transgenic insects to be released for each wild-type male insect in the population. Complicating matters was the expression of insecticide resistance at non-trivial frequencies in the pest population. We assessed the extent to which look-ahead policies were able to recognize the potential threat of insecticide resistance and successfully integrate insecticides and transgenic releases to capitalize upon their respective benefits. Look-ahead policies were competent at anticipating and responding to ecological and economic information. Policies with longer planning horizons made fewer, better-timed insecticidal sprays and made more frequent transgenic releases, which consequently facilitated lower resistance allele frequencies. However, look-ahead policies were ultimately inefficient resistance managers, and directly responded to resistance only when it was dominant and prevalent. Effective long-term agricultural management requires the capacity to anticipate and respond to the evolution of resistance. Look-ahead policies can accommodate all the information pertinent to making the best long-term decision but may lack the perspective to actually do so.

Dataset Information

Comparative Gene Mapping as a Tool to Understand the Evolution of Pest Crop Insect Chromosomes.

Publications

Comparative Gene Mapping as a Tool to Understand the Evolution of Pest Crop Insect Chromosomes.

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