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Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen.

ABSTRACT: Sclerospora graminicola pathogen is the most important biotic production constraints of pearl millet in India, Africa and other parts of the world. We report a de novo whole genome assembly and analysis of pathotype 1, one of the most virulent pathotypes of S. graminicola from India. The draft genome assembly contained 299,901,251 bp with 65,404 genes. This study may help understand the evolutionary pattern of pathogen and aid elucidation of effector evolution for devising effective durable resistance breeding strategies in pearl millet.

SUBMITTER: Nayaka SC

PROVIDER: S-EPMC5647520 | biostudies-literature | 2017 Dec

REPOSITORIES: biostudies-literature

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Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen.

Nayaka S Chandra SC Shetty H Shekar HS Satyavathi C Tara CT Yadav Rattan S RS Kishor P B Kavi PBK Nagaraju M M Anoop T A TA Kumar M Milner MM Kuriakose Boney B Chakravartty Navajeet N Katta A V S K Mohan AVSKM Lachagari V B Reddy VBR Singh Om Vir OV Sahu Pranav Pankaj PP Puranik Swati S Kaushal Pankaj P Srivastava Rakesh K RK

Biotechnology reports (Amsterdam, Netherlands) 20170824

Sclerospora graminicola pathogen is the most important biotic production constraints of pearl millet in India, Africa and other parts of the world. We report a de novo whole genome assembly and analysis of pathotype 1, one of the most virulent pathotypes of S. graminicola from India. The draft genome assembly contained 299,901,251 bp with 65,404 genes. This study may help understand the evolutionary pattern of pathogen and aid elucidation of effector evolution for devising e ...[more]

PMID: 29062722

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