Dataset Information

Soil Bacterial Community Structure and Co-occurrence Pattern during Vegetation Restoration in Karst Rocky Desertification Area.

ABSTRACT: Vegetation restoration has been widely used in karst rocky desertification (KRD) areas of southwestern China, but the response of microbial community to revegetation has not been well characterized. We investigated the diversity, structure, and co-occurrence patterns of bacterial communities in soils of five vegetation types (grassland, shrubbery, secondary forest, pure plantation and mixed plantation) in KRD area using high-throughput sequencing of the 16S rRNA gene. Bray-Curtis dissimilarity analysis revealed that 15 bacterial community samples were clustered into five groups that corresponded very well to the five vegetation types. Shannon diversity was positively correlated with pH and Ca2+ content but negatively correlated with organic carbon, total nitrogen, and soil moisture. Redundancy analysis indicated that soil pH, Ca2+ content, organic carbon, total nitrogen, and soil moisture jointly influenced bacterial community structure. Co-occurrence network analysis revealed non-random assembly patterns of bacterial composition in the soils. Bryobacter, GR-WP33-30, and Rhizomicrobium were identified as keystone genera in co-occurrence network. These results indicate that diverse soil physicochemical properties and potential interactions among taxa during vegetation restoration may jointly affect the bacterial community structure in KRD regions.

SUBMITTER: Xue L

PROVIDER: S-EPMC5717032 | biostudies-literature | 2017

REPOSITORIES: biostudies-literature

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Publications

Soil Bacterial Community Structure and Co-occurrence Pattern during Vegetation Restoration in Karst Rocky Desertification Area.

Xue Liang L Ren Huadong H Li Sheng S Leng Xiuhui X Yao Xiaohua X

Frontiers in microbiology 20171201

Vegetation restoration has been widely used in karst rocky desertification (KRD) areas of southwestern China, but the response of microbial community to revegetation has not been well characterized. We investigated the diversity, structure, and co-occurrence patterns of bacterial communities in soils of five vegetation types (grassland, shrubbery, secondary forest, pure plantation and mixed plantation) in KRD area using high-throughput sequencing of the 16S rRNA gene. Bray-Curtis dissimilarity a ...[more]

PMID: 29250053

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Project description:Karst rocky desertification (KRD) is a process of land degradation, which causes desert-like landscapes, deconstruction of endemic biomass, and declined soil quality. The relationship of KRD progression with above-ground communities (e.g. vegetation and animal) is well-studied. Interaction of soil desertification with underground communities, such as soil microbiome, however, is vastly unknown. This study characterizes change in soil bacterial community in response to KRD progression. Soil bacterial communities were surveyed by deep sequencing of 16S amplicons. Eight soil properties, pH, soil organic matter (SOM), total and available nitrogen (TN and AN), total and available phosphorus (TP and AP), and total and available potassium (TK and AK), were measured to assess soil quality. We find that the overall soil quality decreases along with KRD progressive gradient. Soil bacterial community compositions are distinguishingly different in KRD stages. The richness and diversity in bacterial community do not significantly change with KRD progression although a slight increase in diversity was observed. A slight decrease in richness was seen in SKRD areas. Soil pH primarily correlates with bacterial community composition. We identified a core microbiome for KRD soils consisting of; Acidobacteria, Alpha-Proteobacteria, Planctomycetes, Beta-Proteobacteria, Actinobacteria, Firmicutes, Delta-Proteobacteria, Chloroflexi, Bacteroidetes, Nitrospirae, and Gemmatimonadetes in this study. Phylum Cyanobacteria is significantly abundant in non-degraded soils, suggesting that Cyanobacterial activities might be correlated to soil quality. Our results suggest that Proteobacteria are sensitive to changes in soil properties caused by the KRD progression. Alpha- and beta-Proteobacteria significantly predominated in SKRD compared to NKRD, suggesting that Proteobacteria, along with many others in the core microbiome (Acidobacteria, Actinobacteria, Firmicutes, and Nitrospirae), were active in nutrient limiting degraded soils. This study demonstrates the relationship of soil properties with bacterial community in KRD areas. Our results fill the gap of knowledge on change in soil bacterial community during KRD progression.

Project description:Plant functional traits serve as a bridge between plants, the environment, and ecosystem function, playing an important role in predicting the changes in ecosystem function that occur during ecological restoration. However, the response of grassland ecosystem function to plant functional traits in the context of ecological restoration in areas of karst desertification remains unclear. Therefore, in this study, we selected five plant functional traits [namely, plant height (H), specific leaf area (SLA), leaf dry matter content (LDMC), root length (RL), and root dry matter content (RDMC)], measured these along with community-weighted mean (CWM) and functional trait diversity, and combined these measures with 10 indexes related to ecosystem function in order to investigate the differences in plant functional traits and ecosystem function, as well as the relationship between plant functional traits and ecosystem functions, under four ecological restoration models [Dactylis glomerata (DG), Lolium perenne (LP), Lolium perenne + Trifolium repens (LT), and natural grassland (NG)]. We found that: 1) the Margalef index and Shannon-Wiener index were significantly lower for plant species in DG and LP than for those in NG (P<0.05), while the Simpson index was significantly higher in the former than in NG (P<0.05); 2) CWMH, CWMLDMC, and CWMRDMC were significantly higher in DG, LP, and LT than in NG, while CWMSLA was significantly lower in the former than in NG (P<0.05). The functional richness index (FRic) was significantly higher in DG and LP than in NG and LT, but the functional dispersion index (FDis) and Rao's quadratic entropy index (RaoQ) were significantly lower in DG and LP than in NG and LT (P<0.05), and there was no significant difference between DG and LP, or between NG and LT (P>0.05); 3) ecosystem function, including ecosystem productivity, carbon storage, water conservation and soil conservation, was highest in LT and lowest in NG; and 4) CWMLDMC (F=56.7, P=0.024), CWMRL (F=28.7, P=0.024), and CWMH (F=4.5, P=0.048) were the main factors affecting ecosystem function. The results showed that the mixed pasture of perennial ryegrass and white clover was most conductive to restoration of ecosystem function. This discovery has important implications for the establishment of vegetation, optimal utilization of resources, and the sustainable development of degraded karst ecosystems.

Project description:Soil quality assessment is important for karst ecosystems where soil erosion is significant. A large amount of vegetation restoration has been implemented since the early 21st century in degraded karst areas across southwestern China. However, the impacts on soil quality of different restoration types rarely have been compared systematically. In the current study, we investigated the soil quality after a number of vegetation restoration projects as well as their adjacent cropland by analyzing soil samples. Six vegetation restoration types were evaluated, including one natural restoration (natural shrubland, protected for 13 years), three economic forests (4 years Eucalyptus robusta, 4 years Prunus salicina and 6 years Zenia insignis) and two mixed forests (1 year Juglans regia-crop and 13 years Toona sinensis-Pennisetum purpureum ). We evaluated the benefits of different restoration types more accurately by setting each adjacent cropland as the control and setting the variation between the corresponding restored and control site as the evaluation object so that the background differences of six sites could be eliminated. The results indicated that natural shrubland, Toona sinensis-Pennisetum purpureum and Zenia insignis were effective in improving soil quality index (SQI) in degraded karst cropland largely due to their higher SOC and TN content. The variation of SQI (VSQI) of natural shrubland was significantly higher than that in Eucalyptus robusta, Prunus salicina and Juglans regia-crop in total soil layer (0-30 cm) (P < 0.05), indicating natural shrubland had better capacity to improve soil quality. The boosting regression tree model revealed that vegetation restoration type explained 73.49% and restoration time explained 10.30% of the variation in VSQI, which confirmed that vegetation restoration type and restoration time are critical for achieving soil reserves. Therefore, it is vital to select appropriate vegetation type in restoration projects and recovery for a long time in order to achieve better soil quality. The current study provides a theoretical basis on which to assess the effects of different vegetation restoration types on the heterogeneous degraded karst areas.

Dataset Information

Soil Bacterial Community Structure and Co-occurrence Pattern during Vegetation Restoration in Karst Rocky Desertification Area.

Publications

Soil Bacterial Community Structure and Co-occurrence Pattern during Vegetation Restoration in Karst Rocky Desertification Area.

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