Browse
Submit Data
Databases
API
Help

Dataset Information

16 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequence of Bacillus velezensis L-1, Which Has Antagonistic Activity against Pear Diseases.

ABSTRACT: Bacillus velezensis L-1 is an effective biocontrol agent against pear diseases. Here, we report the complete genome sequence of B. velezensis L-1 in which clusters related to the biosynthesis of secondary metabolites were predicted. This genome provides insights into the possible biocontrol mechanisms and furthers application of this specific bacterium.

SUBMITTER: Sun P

PROVIDER: S-EPMC5722058 | biostudies-literature | 2017 Nov

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Sequence of Bacillus velezensis L-1, Which Has Antagonistic Activity against Pear Diseases.

Sun Pingping P Cui Jianchao J Jia Xiaohui X Wang Wenhui W

Genome announcements 20171130 48

Bacillus velezensis L-1 is an effective biocontrol agent against pear diseases. Here, we report the complete genome sequence of B. velezensis L-1 in which clusters related to the biosynthesis of secondary metabolites were predicted. This genome provides insights into the possible biocontrol mechanisms and furthers application of this specific bacterium. ...[more]

PMID: 29192072

Similar Datasets

Complete Genome Sequence of Bacillus velezensis CN026 Exhibiting Antagonistic Activity against Gram-Negative Foodborne Pathogens.

Project description:We report here the complete genome sequence of Bacillus velezensis strain CN026, a member of the B. subtilis group, which is known for its many industrial applications. The genome contains 3,995,812 bp and displays six gene clusters potentially involved in strain CN026's activity against Gram-negative foodborne pathogens.

| S-EPMC5786689 | biostudies-literature

Complete Genome Sequence of Bacillus velezensis GQJK49, a Plant Growth-Promoting Rhizobacterium with Antifungal Activity.

Project description:Bacillus velezensis GQJK49 is a plant growth-promoting rhizobacterium with antifungal activity, which was isolated from Lycium barbarum L. rhizosphere. Here, we report the complete genome sequence of B. velezensis GQJK49. Twelve gene clusters related to its biosynthesis of secondary metabolites, including antifungal and antibacterial antibiotics, were predicted.

| S-EPMC5578859 | biostudies-literature

Complete Genome Sequence of the Endophytic Biocontrol Strain Bacillus velezensis CC09.

Project description:Bacillus velezensis is a heterotypic synonym of B. methylotrophicus, B. amyloliquefaciens subsp. plantarum, and Bacillus oryzicola, and has been used to control plant fungal diseases. In order to fully understand the genetic basis of antimicrobial capacities, we did a complete genome sequencing of the endophytic B. velezensis strain CC09. Genes tightly associated with biocontrol ability, including nonribosomal peptide synthetases, polyketide synthetases, iron acquisition, colonization, and volatile organic compound synthesis were identified in the genome.

| S-EPMC5043560 | biostudies-literature

Complete genome sequence data of chitin-degrading Bacillus velezensis RB.IBE29.

Project description:This work reports the complete genome sequence of chitinolytic Bacillus velezensis RB.IBE29 recently isolated from the rhizosphere of black pepper cultivated in the Central Highlands region of Vietnam. This bacterium had strong antagonistic activity against phytopathogens and possessed a novel chitinase system. The complete genome of strain RB.IBE29 was sequenced using the platforms of Illumina (2×150 PE) and Oxford Nanopore technologies. Assembly showed that strain RB.IBE29 has one 3,957,092-bp circular chromosome with 46.5 % G+C content. DFAST analysis revealed the genome contains 3819 protein-coding genes, 27 rRNAs, 86 tRNAs, 1 tmRNA, 144 pseudogenes, and shares an ANI value of 97.51 % with that of reported B. velezensis NRRL B-41580. The B. velezensis RB.IBE29 genome possesses at least 42 genes concerning heavy metal resistance and plant-growth promotion. CAZymes analysis showed that 103 genes coding for carbohydrate-active enzymes were predicted in the genome, including 41 genes for glycoside hydrolases, 34 genes for glycosyl transferases, 3 genes for polysaccharide lyases, 17 genes for carbohydrate esterases, 6 genes for auxiliary activities, and 2 genes for carbohydrate-binding modules. Of these deduced enzymes, at least 8 probably possess activities against phytopathogens, such as family 18 chitinases, family 16 glucanase, and family 46 chitosanase. AntiSMASH analysis exhibited that 15 biosynthetic gene clusters were found in the genome; among them, 5 show no sequence similarity to known bacterial clusters. The raw sequences in this work were deposited in Mendeley Data. The complete genome sequence of strain RB.IBE29 was submitted to the DDBJ/GenBank/EMBL under accession number AP028932. The obtained data provide insight into the biocontrol ability and plant-growth promotion of B. velezensis RB.IBE29. The data are valuable for further explorations concerning crop production and other fields using gene expression approaches.

| S-EPMC10700586 | biostudies-literature

Complete Genome Sequence of vB_BveP-Goe6, a Virus Infecting Bacillus velezensis FZB42.

Project description:The new virus vB_BveP-Goe6 was isolated on the host organism Bacillus velezensis FZB42. The virus morphology indicated its association with the genus Phi29virus The genome of vB_BveP-Goe6 (19,105 bp) comprises a linear chromosome with a GC content of 39.99%. The genome harbors 26 putative protein-coding genes and a noncoding packaging RNA.

| S-EPMC5823994 | biostudies-literature

Complete Genome Sequence of Bacillus velezensis Strain S4, Isolated from Biochar-Treated Soil.

Project description:Here, we report the complete genome sequence of Bacillus velezensis strain S4, which was isolated from biochar-amended agricultural soil collected in Smyrna, Delaware. The genome is 4.07 Mbp, encodes 3,918 predicted proteins, and has a GC content of 46.4%.

| S-EPMC7225544 | biostudies-literature

Complete Genome Sequence of Bacillus velezensis LABIM40, an Effective Antagonist of Fungal Plant Pathogens.

Project description:Bacillus velezensis strain LABIM40 holds high potential for biological control of plant pathogens. Its complete genome contains one chromosome of 3,972,310 bp with 3,777 DNA coding sequences and displays 33 gene clusters potentially involved in the suppression of fungal pathogens.

| S-EPMC6013614 | biostudies-literature

The complete genome sequence of Bacillus velezensis LPL061, an exopolysaccharide-producing bacterium.

Project description:Bacillus velezensis LPL061, which shows strong exopolysaccharide (EPS) producing capacity, was isolated from carnations in Beijing, China. The complete genome of LPL061 comprised a single circular chromosome (3,907,268 bp; G+C content of 46.7%) with 3,737 coding DNA sequences, 26 rRNA, and 89 tRNA. According to genome analysis, 12 protein-coding genes which related to polysaccharide biosynthesis in LPL061 were identified. Comparative genome analysis revealed that the EPS biosynthetic gene cluster was relatively conserved among Bacillus species. EPS showed approximately 60% inhibitory activity on the α-glucosidase at 100 μg/mL. The results of quantitative reverse transcription PCR further demonstrated that compared to insulin-resistant model with insulin (500 μg/mL) (without EPS treatment), the insulin-resistant HepG2 cells treated with EPS decreased the expression of phosphoenolpyruvate carboxykinase (PEPCK) from 4.425 to 0.1587, glucose-6-phosphatase (G6Pase) decreased from 4.272 to 0.1929, and glycogen synthase kinase3β (GSK(3)β) decreased from 2.451 to 0.993, respectively. Meanwhile, EPS treatment increased GS expression and resulted in intracellular glycogen concentration increased from 28.30% to 86.48%, which further supported that EPS form LPL061 could reduce the concentration of blood glucose effectively. These results could be beneficial for better understanding of the hypoglycemic mechanism of B. velezensis LPL061 EPS and developing an EPS-based anti-diabetic agent in the future.

| S-EPMC7211227 | biostudies-literature

Draft Genome Sequence of Bacillus velezensis Strain ZeaDK315Endo16.

Project description:Here, we report the draft genome sequence of the endophytic Bacillus velezensis strain ZeaDK315Endo16, isolated from DK315 maize from Lyon, France. B. velezensis ZeaDK315Endo16 exhibits a suppressive ability toward Fusarium graminearum, a widely known threat to maize production and quality.

| S-EPMC6856261 | biostudies-literature

Complete Genome Sequence of Biocontroller Bacillus velezensis Strain JTYP2, Isolated from Leaves of Echeveria laui.

Project description:Bacillus velezensis JTYP2 was isolated from the leaves of Echeveria laui in Qingzhou, China, and may control some of the fungal pathogens of the plant. Here, we present the complete genome sequence of B. velezensis JTYP2. Several gene clusters related to its biosynthesis of antimicrobial compounds were predicted.

| S-EPMC5473263 | biostudies-literature