Dataset Information

Ancestrality and evolution of trait syndromes in finches (Fringillidae).

ABSTRACT: Species traits have been hypothesized by one of us (Ponge, 2013) to evolve in a correlated manner as species colonize stable, undisturbed habitats, shifting from "ancestral" to "derived" strategies. We predicted that generalism, r-selection, sexual monomorphism, and migration/gregariousness are the ancestral states (collectively called strategy A) and evolved correlatively toward specialism, K-selection, sexual dimorphism, and residence/territoriality as habitat stabilized (collectively called B strategy). We analyzed the correlated evolution of four syndromes, summarizing the covariation between 53 traits, respectively, involved in ecological specialization, r-K gradient, sexual selection, and dispersal/social behaviors in 81 species representative of Fringillidae, a bird family with available natural history information and that shows variability for all these traits. The ancestrality of strategy A was supported for three of the four syndromes, the ancestrality of generalism having a weaker support, except for the core group Carduelinae (69 species). It appeared that two different B-strategies evolved from the ancestral state A, both associated with highly predictable environments: one in poorly seasonal environments, called B1, with species living permanently in lowland tropics, with "slow pace of life" and weak sexual dimorphism, and one in highly seasonal environments, called B2, with species breeding out-of-the-tropics, migratory, with a "fast pace of life" and high sexual dimorphism.

SUBMITTER: Ponge JF

PROVIDER: S-EPMC5723631 | biostudies-literature | 2017 Dec

REPOSITORIES: biostudies-literature

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Ancestrality and evolution of trait syndromes in finches (Fringillidae).

Ponge Jean-François JF Zuccon Dario D Elias Marianne M Pavoine Sandrine S Henry Pierre-Yves PY Théry Marc M Guilbert Éric É

Ecology and evolution 20171021 23

Species traits have been hypothesized by one of us (Ponge, 2013) to evolve in a correlated manner as species colonize stable, undisturbed habitats, shifting from "ancestral" to "derived" strategies. We predicted that generalism, r-selection, sexual monomorphism, and migration/gregariousness are the ancestral states (collectively called strategy A) and evolved correlatively toward specialism, K-selection, sexual dimorphism, and residence/territoriality as habitat stabilized (collectively called B ...[more]

PMID: 29238527

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Project description:The prevailing theory for the molecular basis of evolution involves genetic mutations that ultimately generate the heritable phenotypic variation on which natural selection acts. However, epigenetic transgenerational inheritance of phenotypic variation may also play an important role in evolutionary change. A growing number of studies have demonstrated the presence of epigenetic inheritance in a variety of different organisms that can persist for hundreds of generations. The possibility that epigenetic changes could accumulate over macroevolutionary time has been considered, but not yet seldom been tested empirically. The current study was designed to compare epigenetic changes among several closely related species of Darwin’s finches, a well-known example of adaptive radiation. Erythrocyte DNA was obtained from five species of sympatric Darwin's finches that vary in phylogenetic relatedness. Genome wide alterations in genetic mutations using copy number variation (CNV) were compared to epigenetic alterations associated with differential DNA methylation regions (epimutations). Epimutations were more common than genetic CNV mutations among the five species; furthermore, the number of epimutations increased monotonically with phylogenetic distance. Interestingly, the number of genetic CNV mutations did not consistently increase with phylogenetic distance. The number, chromosomal locations, regional clustering, and lack of overlap of epimutations and genetic mutations suggests that epigenetic changes are distinct and that they correlate with the evolutionary history of Darwin’s finches. The potential functional significance of the epimutations was explored by comparing their locations on the genome to the location of evolutionarily important genes and cellular pathways in birds. Specific epimutations were associated with genes related to the bone morphogenic protein (BMP), toll receptor, and melanogenesis signaling pathways. Species- specific epimutations were significantly over-represented in these pathways. Since environmental factors are known to rapidly alter heritable changes in the epigenome, it is possible that epigenetic changes have played a contributing role in the molecular basis of the evolution of Darwin's finches.

Project description:The prevailing theory for the molecular basis of evolution involves genetic mutations that ultimately generate the heritable phenotypic variation on which natural selection acts. However, epigenetic transgenerational inheritance of phenotypic variation may also play an important role in evolutionary change. A growing number of studies have demonstrated the presence of epigenetic inheritance in a variety of different organisms that can persist for hundreds of generations. The possibility that epigenetic changes can accumulate over longer periods of evolutionary time has seldom been tested empirically. This study was designed to compare epigenetic changes among several closely related species of Darwin's finches, a well-known example of adaptive radiation. Erythrocyte DNA was obtained from five species of sympatric Darwin's finches that vary in phylogenetic relatedness. Genome-wide alterations in genetic mutations using copy number variation (CNV) were compared with epigenetic alterations associated with differential DNA methylation regions (epimutations). Epimutations were more common than genetic CNV mutations among the five species; furthermore, the number of epimutations increased monotonically with phylogenetic distance. Interestingly, the number of genetic CNV mutations did not consistently increase with phylogenetic distance. The number, chromosomal locations, regional clustering, and lack of overlap of epimutations and genetic mutations suggest that epigenetic changes are distinct and that they correlate with the evolutionary history of Darwin's finches. The potential functional significance of the epimutations was explored by comparing their locations on the genome to the location of evolutionarily important genes and cellular pathways in birds. Specific epimutations were associated with genes related to the bone morphogenic protein, toll receptor, and melanogenesis signaling pathways. Species-specific epimutations were significantly overrepresented in these pathways. As environmental factors are known to result in heritable changes in the epigenome, it is possible that epigenetic changes contribute to the molecular basis of the evolution of Darwin's finches.

Project description:QuestionHow does the conservation (rarity) value of arable weed communities differ along intensification gradients? Which functional traits best distinguish the weed communities of more and less extensively managed fields? Can the same traits predict the rarity of individual weed species?LocationHungary.MethodsUsing relevé data from 60 cereal and 70 stubble fields, together with weed trait data, we characterized community responses to arable intensification using functional trait analyses based on trait-convergence and trait-divergence assembly patterns. We also examined how well the broad-scale rarity status of species predicts their occurrence along intensification gradients, and how it maps onto our functional classifications describing intensification responses.ResultsThe response of weeds to intensification in cereal fields was best described by a functional classification based on species' flowering duration, maximum height and seed weight: weeds of extensively managed fields have short flowering seasons (2-5 mo) and particularly large or small seeds. The highest proportions of rare species also happen to be found in these groups. The rarest weeds among these species tend to be late-winter and early-summer annuals, while the rare species of stubble fields tend to be broad-leaved with low nitrogen requirements, small seeds and short height. Stubble fields showed a decline in weed cover with increasing application of fertilizer and distance from the field edge, but we could detect no strong associations of management factors with trait composition, perhaps because the intensification gradient across these fields was shorter.ConclusionsMany rare Hungarian weeds are associated with traditional extensive farming practices. They are particularly characterized by short, midsummer flowering periods and by preference for low nitrogen levels, but a range of trait syndromes must be considered to understand their ecology and conservation. Analyses based on trait-divergence patterns, rather than trait-convergence patterns, provide better insights into the functional composition of weed communities, emphasizing the importance of disruptive filters in weed community assembly and the need for improved methods to detect such effects.

Dataset Information

Ancestrality and evolution of trait syndromes in finches (Fringillidae).

Publications

Ancestrality and evolution of trait syndromes in finches (Fringillidae).

Similar Datasets

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