Dataset Information

Detecting Anatomical Landmarks From Limited Medical Imaging Data Using Two-Stage Task-Oriented Deep Neural Networks.

ABSTRACT: One of the major challenges in anatomical landmark detection, based on deep neural networks, is the limited availability of medical imaging data for network learning. To address this problem, we present a two-stage task-oriented deep learning method to detect large-scale anatomical landmarks simultaneously in real time, using limited training data. Specifically, our method consists of two deep convolutional neural networks (CNN), with each focusing on one specific task. Specifically, to alleviate the problem of limited training data, in the first stage, we propose a CNN based regression model using millions of image patches as input, aiming to learn inherent associations between local image patches and target anatomical landmarks. To further model the correlations among image patches, in the second stage, we develop another CNN model, which includes a) a fully convolutional network that shares the same architecture and network weights as the CNN used in the first stage and also b) several extra layers to jointly predict coordinates of multiple anatomical landmarks. Importantly, our method can jointly detect large-scale (e.g., thousands of) landmarks in real time. We have conducted various experiments for detecting 1200 brain landmarks from the 3D T1-weighted magnetic resonance images of 700 subjects, and also 7 prostate landmarks from the 3D computed tomography images of 73 subjects. The experimental results show the effectiveness of our method regarding both accuracy and efficiency in the anatomical landmark detection.

SUBMITTER: Zhang J

PROVIDER: S-EPMC5729285 | biostudies-literature | 2017 Oct

REPOSITORIES: biostudies-literature

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Publications

Detecting Anatomical Landmarks From Limited Medical Imaging Data Using Two-Stage Task-Oriented Deep Neural Networks.

Zhang Jun J Liu Mingxia M Shen Dinggang D

IEEE transactions on image processing : a publication of the IEEE Signal Processing Society 20170628 10

One of the major challenges in anatomical landmark detection, based on deep neural networks, is the limited availability of medical imaging data for network learning. To address this problem, we present a two-stage task-oriented deep learning method to detect large-scale anatomical landmarks simultaneously in real time, using limited training data. Specifically, our method consists of two deep convolutional neural networks (CNN), with each focusing on one specific task. Specifically, to alleviat ...[more]

PMID: 28678706

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Project description:ObjectivePatients with rotator cuff tears present often with glenohumeral joint instability. Assessing anatomic angles and shoulder kinematics from fluoroscopy requires labelling of specific landmarks in each image. This study aimed to develop an artificial intelligence model for automatic landmark detection from fluoroscopic images for motion tracking of the scapula and humeral head.Materials and methodsFluoroscopic images were acquired for both shoulders of 25 participants (N = 12 patients with unilateral rotator cuff tear, 6 men, mean (standard deviation) age: 63.7 ± 9.7 years; 13 asymptomatic subjects, 7 men, 58.2 ± 8.9 years) during a 30° arm abduction and adduction movement in the scapular plane with and without handheld weights of 2 and 4 kg. A 3D full-resolution convolutional neural network (nnU-Net) was trained to automatically locate five landmarks (glenohumeral joint centre, humeral shaft, inferior and superior edges of the glenoid and most lateral point of the acromion) and a calibration sphere.ResultsThe nnU-Net was trained with ground-truth data from 6021 fluoroscopic images of 40 shoulders and tested with 1925 fluoroscopic images of 10 shoulders. The automatic landmark detection algorithm achieved an accuracy above inter-rater variability and slightly below intra-rater variability. All landmarks and the calibration sphere were located within 1.5 mm, except the humeral landmark within 9.6 mm, but differences in abduction angles were within 1°.ConclusionThe proposed algorithm detects the desired landmarks on fluoroscopic images with sufficient accuracy and can therefore be applied to automatically assess shoulder motion, scapular rotation or glenohumeral translation in the scapular plane.Clinical relevance statementThis nnU-net algorithm facilitates efficient and objective identification and tracking of anatomical landmarks on fluoroscopic images necessary for measuring clinically relevant anatomical configuration (e.g. critical shoulder angle) and enables investigation of dynamic glenohumeral joint stability in pathological shoulders.Key points• Anatomical configuration and glenohumeral joint stability are often a concern after rotator cuff tears. • Artificial intelligence applied to fluoroscopic images helps to identify and track anatomical landmarks during dynamic movements. • The developed automatic landmark detection algorithm optimised the labelling procedures and is suitable for clinical application.

Dataset Information

Detecting Anatomical Landmarks From Limited Medical Imaging Data Using Two-Stage Task-Oriented Deep Neural Networks.

Publications

Detecting Anatomical Landmarks From Limited Medical Imaging Data Using Two-Stage Task-Oriented Deep Neural Networks.

Similar Datasets

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