MICRA: an automatic pipeline for fast characterization of microbial genomes from high-throughput sequencing data.
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ABSTRACT:
SUBMITTER: Caboche S
PROVIDER: S-EPMC5738152 | biostudies-literature | 2017 Dec
REPOSITORIES: biostudies-literature
Publications
MICRA: an automatic pipeline for fast characterization of microbial genomes from high-throughput sequencing data.
Caboche Ségolène S Even Gaël G Loywick Alexandre A Audebert Christophe C Hot David D
Genome biology 20171219 1
The increase in available sequence data has advanced the field of microbiology; however, making sense of these data without bioinformatics skills is still problematic. We describe MICRA, an automatic pipeline, available as a web interface, for microbial identification and characterization through reads analysis. MICRA uses iterative mapping against reference genomes to identify genes and variations. Additional modules allow prediction of antibiotic susceptibility and resistance and comparing the ...[more]
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