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Ephemeral-habitat colonization and neotropical species richness of Caenorhabditis nematodes.

ABSTRACT: BACKGROUND:The drivers of species co-existence in local communities are especially enigmatic for assemblages of morphologically cryptic species. Here we characterize the colonization dynamics and abundance of nine species of Caenorhabditis nematodes in neotropical French Guiana, the most speciose known assemblage of this genus, with resource use overlap and notoriously similar external morphology despite deep genomic divergence. METHODS:To characterize the dynamics and specificity of colonization and exploitation of ephemeral resource patches, we conducted manipulative field experiments and the largest sampling effort to date for Caenorhabditis outside of Europe. This effort provides the first in-depth quantitative analysis of substrate specificity for Caenorhabditis in natural, unperturbed habitats. RESULTS:We amassed a total of 626 strain isolates from nine species of Caenorhabditis among 2865 substrate samples. With the two new species described here (C. astrocarya and C. dolens), we estimate that our sampling procedures will discover few additional species of these microbivorous animals in this tropical rainforest system. We demonstrate experimentally that the two most prevalent species (C. nouraguensis and C. tropicalis) rapidly colonize fresh resource patches, whereas at least one rarer species shows specialist micro-habitat fidelity. CONCLUSION:Despite the potential to colonize rapidly, these ephemeral patchy resources of rotting fruits and flowers are likely to often remain uncolonized by Caenorhabditis prior to their complete decay, implying dispersal-limited resource exploitation. We hypothesize that a combination of rapid colonization, high ephemerality of resource patches, and species heterogeneity in degree of specialization on micro-habitats and life histories enables a dynamic co-existence of so many morphologically cryptic species of Caenorhabditis.

SUBMITTER: Ferrari C

PROVIDER: S-EPMC5738176 | biostudies-literature | 2017 Dec

REPOSITORIES: biostudies-literature

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Ephemeral-habitat colonization and neotropical species richness of Caenorhabditis nematodes.

Ferrari Céline C Salle Romain R Callemeyn-Torre Nicolas N Jovelin Richard R Cutter Asher D AD Braendle Christian C

BMC ecology 20171219 1

<h4>Background</h4>The drivers of species co-existence in local communities are especially enigmatic for assemblages of morphologically cryptic species. Here we characterize the colonization dynamics and abundance of nine species of Caenorhabditis nematodes in neotropical French Guiana, the most speciose known assemblage of this genus, with resource use overlap and notoriously similar external morphology despite deep genomic divergence.<h4>Methods</h4>To characterize the dynamics and specificity ...[more]

PMID: 29258487

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Project description:In stark contrast to the wealth of detail about C. elegans developmental biology and molecular genetics, biologists lack basic data for understanding the abundance and distribution of Caenorhabditis species in natural areas that are unperturbed by human influence.Here we report the analysis of dense sampling from a small, remote site in the Amazonian rain forest of the Nouragues Natural Reserve in French Guiana.Sampling of rotting fruits and flowers revealed proliferating populations of Caenorhabditis, with up to three different species co-occurring within a single substrate sample, indicating remarkable overlap of local microhabitats. We isolated six species, representing the highest local species richness for Caenorhabditis encountered to date, including both tropically cosmopolitan and geographically restricted species not previously isolated elsewhere. We also documented the structure of within-species molecular diversity at multiple spatial scales, focusing on 57 C. briggsae isolates from French Guiana. Two distinct genetic subgroups co-occur even within a single fruit. However, the structure of C. briggsae population genetic diversity in French Guiana does not result from strong local patterning but instead presents a microcosm of global patterns of differentiation. We further integrate our observations with new data from nearly 50 additional recently collected C. briggsae isolates from both tropical and temperate regions of the world to re-evaluate local and global patterns of intraspecific diversity, providing the most comprehensive analysis to date for C. briggsae population structure across multiple spatial scales.The abundance and species richness of Caenorhabditis nematodes is high in a Neotropical rainforest habitat that is subject to minimal human interference. Microhabitat preferences overlap for different local species, although global distributions include both cosmopolitan and geographically restricted groups. Local samples for the cosmopolitan C. briggsae mirror its pan-tropical patterns of intraspecific polymorphism. It remains an important challenge to decipher what drives Caenorhabditis distributions and diversity within and between species.

Project description:BackgroundAmphibians are rapidly vanishing. At the same time, it is most likely that the number of amphibian species is highly underestimated. Recent DNA barcoding work has attempted to define a threshold between intra- and inter-specific genetic distances to help identify candidate species. In groups with high extinction rates and poorly known species boundaries, like amphibians, such tools may provide a way to rapidly evaluate species richness.MethodologyHere we analyse published and new 16S rDNA sequences from 60 frog species of Amazonia-Guianas to obtain a minimum estimate of the number of undescribed species in this region. We combined isolation by distance, phylogenetic analyses, and comparison of molecular distances to evaluate threshold values for the identification of candidate species among these frogs.Principal findingsIn most cases, geographically distant populations belong to genetically highly distinct lineages that could be considered as candidate new species. This was not universal among the taxa studied and thus widespread species of Neotropical frogs really do exist, contrary to previous assumptions. Moreover, the many instances of paraphyly and the wide overlap between distributions of inter- and intra-specific distances reinforce the hypothesis that many cryptic species remain to be described. In our data set, pairwise genetic distances below 0.02 are strongly correlated with geographical distances. This correlation remains statistically significant until genetic distance is 0.05, with no such relation thereafter. This suggests that for higher distances allopatric and sympatric cryptic species prevail. Based on our analyses, we propose a more inclusive pairwise genetic distance of 0.03 between taxa to target lineages that could correspond to candidate species.ConclusionsUsing this approach, we identify 129 candidate species, two-fold greater than the 60 species included in the current study. This leads to estimates of around 170 to 460 frog taxa unrecognized in Amazonia-Guianas.SignificanceAs a consequence the global amphibian decline detected especially in the Neotropics may be worse than realised.

Project description:Numerous plant functional traits of ecophysiology and morphology associated with an epiphytic life history have promoted relatively high rates of evolutionary diversification and ecological success in tropical families such as the Orchidaeae, Polypodiaceae, Bromeliaceae, and Cactaceae. Epiphytic life histories are relatively uncommon in the Araceae and rare in the Cyclanthaceae which lack key functional traits for epiphytism. Only two lineages of Neotropical Araceae, Anthurium and Philodendron, include examples of epiphyte life histories. The evolution of a hemiepiphytic life history represented an important development for tropical Araceae by providing functional traits that have greatly expanded opportunities for adaptive radiation and ecological success as indicated by species richness and frequency of occurrence. The key adaptive trait allowing the diversification of hemiepiphytic Araceae was the development of heteroblastic growth of leaves and stems. Although hemiepiphytic life histories are present in the Cyclanthaceae, the family has undergone only modest speciation and limited ecological success in both its epiphytes and hemiepiphytes. Extensive sampling of more than 4600 trees from primary forest on four soil groups in northeastern Costa Rica have found a modest diversity of 15 species of epiphytic Araceae but only two species of epiphytic Cyclanthaceae. In contrast, 38 species of hemiepiphytic Araceae and 5 species of hemiepiphytic Cyclanthaceae were sampled, indicating relatively limited adaptive radiation of hemiepiphytic Cyclanthaceae and lower ecological success. Using summed values of frequency of occurrence as a measure of ecological success, epiphytic Araceae were 18 to 42 times more frequent than epiphytic Cyclanthaceae in swamp, alluvial, and residual soil forests. Summed frequencies of occurrence of hemiepiphytic Araceae were 7 to 13 times higher than those of hemiepiphytic Cyclanthaceae. The four soil groups were similar in their floristic composition of epiphytic and hemiepiphytic Araceae and Cyclanthaceae, but the frequencies of occurrence of both epiphytes and hemiepiphytes were, with few exceptions, highest on swamp soil plots, with alluvial soil plots slightly less favorable.

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Ephemeral-habitat colonization and neotropical species richness of Caenorhabditis nematodes.

Publications

Ephemeral-habitat colonization and neotropical species richness of Caenorhabditis nematodes.

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