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The muscle development transcriptome landscape of ovariectomized goat.


ABSTRACT: In practical production, almost all rams and about 50% of ewes are used to fatten. Researchers have proved that ewe ovariectomy could improve the productivity significantly, but the specific molecular mechanism is still unknown. In this study, five independent cDNA libraries (three and two from ovariectomized and normal ewe longissimus dorsi samples, respectively) were constructed to thoroughly explore the global transcriptome, further to reveal how the ovariectomized ewes influence muscle development by Illumina2000 sequencing technology. As a result, 205?358 transcripts and 118?264 unigenes were generated. 15?490 simple sequence repeats (SSRs) were revealed and divided into six types, and the short repeat sequence SSR (monomers, dimers, trimers) was the domain type. Single nucleotide polymorphism analysis found that the number of transition was greater than the number of transversion among the five libraries. Furthermore, 1612 differently expressed genes (DEGs) (Log2fold_change?>?1 and p?

SUBMITTER: Zhang S 

PROVIDER: S-EPMC5750031 | biostudies-literature | 2017 Dec

REPOSITORIES: biostudies-literature

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The muscle development transcriptome landscape of ovariectomized goat.

Zhang Sihuan S   Xu Han H   Liu Xinfeng X   Yang Qing Q   Pan Chuanying C   Lei Chuzhao C   Dang Ruihua R   Chen Hong H   Lan Xianyong X  

Royal Society open science 20171220 12


In practical production, almost all rams and about 50% of ewes are used to fatten. Researchers have proved that ewe ovariectomy could improve the productivity significantly, but the specific molecular mechanism is still unknown. In this study, five independent cDNA libraries (three and two from ovariectomized and normal ewe longissimus dorsi samples, respectively) were constructed to thoroughly explore the global transcriptome, further to reveal how the ovariectomized ewes influence muscle devel  ...[more]

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