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Phases and rates of iron and magnetism changes during paddy soil development on calcareous marine sediment and acid Quaternary red-clay.

ABSTRACT: Dynamic changes in Fe oxides and magnetic properties during natural pedogenesis are well documented, but variations and controls of Fe and magnetism changes during anthropedogenesis of paddy soils strongly affected by human activities remain poorly understood. We investigated temporal changes in different Fe pools and magnetic parameters in soil profiles from two contrasting paddy soil chronosequences developed on calcareous marine sediment and acid Quaternary red clay in Southern China to understand the directions, phases and rates of Fe and magnetism evolution in Anthrosols. Results showed that paddy soil evolution under the influence of artificial submergence and drainage caused changes in soil moisture regimes and redox conditions with both time and depth that controlled Fe transport and redistribution, leading to increasing profile differentiation of Fe oxides, rapid decrease of magnetic parameters, and formation of diagnostic horizons and features, irrespective of the different parent materials. However, the initial parent material characteristics (pH, Fe content and composition, weathering degree and landscape positions) exerted a strong influence on the rates and trajectories of Fe oxides evolution as well as the phases and rates of magnetism changes. This influence diminished with time as prolonged rice cultivation drove paddy soil evolving to common pedogenic features.

SUBMITTER: Huang L

PROVIDER: S-EPMC5765014 | biostudies-literature | 2018 Jan

REPOSITORIES: biostudies-literature

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Phases and rates of iron and magnetism changes during paddy soil development on calcareous marine sediment and acid Quaternary red-clay.

Huang Laiming L Jia Xiaoxu X Shao Ming'an M Chen Liumei L Han Guangzhong G Zhang Ganlin G

Scientific reports 20180111 1

Dynamic changes in Fe oxides and magnetic properties during natural pedogenesis are well documented, but variations and controls of Fe and magnetism changes during anthropedogenesis of paddy soils strongly affected by human activities remain poorly understood. We investigated temporal changes in different Fe pools and magnetic parameters in soil profiles from two contrasting paddy soil chronosequences developed on calcareous marine sediment and acid Quaternary red clay in Southern China to under ...[more]

PMID: 29323284

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Project description:The difficulty involved in quantifying biogeochemically significant microbes in marine sediments limits our ability to assess interspecific interactions, population turnover times, and niches of uncultured taxa. We incubated surface sediments from Cape Lookout Bight, North Carolina, USA, anoxically at 21°C for 122 days. Sulfate decreased until day 68, after which methane increased, with hydrogen concentrations consistent with the predicted values of an electron donor exerting thermodynamic control. We measured turnover times using two relative quantification methods, quantitative PCR (qPCR) and the product of 16S gene read abundance and total cell abundance (FRAxC, which stands for "fraction of read abundance times cells"), to estimate the population turnover rates of uncultured clades. Most 16S rRNA reads were from deeply branching uncultured groups, and ?98% of 16S rRNA genes did not abruptly shift in relative abundance when sulfate reduction gave way to methanogenesis. Uncultured Methanomicrobiales and Methanosarcinales increased at the onset of methanogenesis with population turnover times estimated from qPCR at 9.7 ± 3.9 and 12.6 ± 4.1 days, respectively. These were consistent with FRAxC turnover times of 9.4 ± 5.8 and 9.2 ± 3.5 days, respectively. Uncultured Syntrophaceae, which are possibly fermentative syntrophs of methanogens, and uncultured Kazan-3A-21 archaea also increased at the onset of methanogenesis, with FRAxC turnover times of 14.7 ± 6.9 and 10.6 ± 3.6 days. Kazan-3A-21 may therefore either perform methanogenesis or form a fermentative syntrophy with methanogens. Three genera of sulfate-reducing bacteria, Desulfovibrio, Desulfobacter, and Desulfobacterium, increased in the first 19 days before declining rapidly during sulfate reduction. We conclude that population turnover times on the order of days can be measured robustly in organic-rich marine sediment, and the transition from sulfate-reducing to methanogenic conditions stimulates growth only in a few clades directly involved in methanogenesis, rather than in the whole microbial community.IMPORTANCE Many microbes cannot be isolated in pure culture to determine their preferential growth conditions and predict their response to changing environmental conditions. We created a microcosm of marine sediments that allowed us to simulate a diagenetic profile using a temporal analog for depth. This allowed for the observation of the microbial community population dynamics caused by the natural shift from sulfate reduction to methanogenesis. Our research provides evidence for the population dynamics of uncultured microbes as well as the application of a novel method of turnover rate analysis for individual taxa within a mixed incubation, FRAxC, which stands for "fraction of read abundance times cells," which was verified by quantitative PCR. This allows for the calculation of population turnover times for microbes in a natural setting and the identification of uncultured clades involved in geochemical processes.

Dataset Information

Phases and rates of iron and magnetism changes during paddy soil development on calcareous marine sediment and acid Quaternary red-clay.

Publications

Phases and rates of iron and magnetism changes during paddy soil development on calcareous marine sediment and acid Quaternary red-clay.

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