Dataset Information

Seeking quantitative morphological characters for species identification in soldiers of Puerto Rican Heterotermes (Dictyoptera, Blattaria, Termitoidae, Rhinotermitidae).

ABSTRACT: Subterranean termites in the genus Heterotermes Froggatt (Rhinotermitidae: Heterotermitinae) are pantropical wood feeders capable of causing significant structural damage. The aim of this study was to investigate soldier morphological attributes in three Puerto Rican species of Heterotermes previously identified by sequencing of two mitochondrial genes and attributed to Heterotermes tenuis (Hagen), H. convexinotatus (Snyder) and H. cardini (Snyder). Soldiers (n = 156) were imaged and measured using the Auto-Montage image-stacking program. We demonstrated that Puerto Rican Heterotermes soldiers could not be identified to species level based upon seven morphometric indices or any combination thereof. Nor could differences in soldier head pilosity be used to discriminate species, in contrast to previous findings. However, previously described characters of the soldier tergal setae were reported to be useful in discriminating H. tenuis from both of its Puerto Rican congeners.

SUBMITTER: Griebenow ZH

PROVIDER: S-EPMC5769715 | biostudies-literature | 2017

REPOSITORIES: biostudies-literature

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Seeking quantitative morphological characters for species identification in soldiers of Puerto Rican Heterotermes (Dictyoptera, Blattaria, Termitoidae, Rhinotermitidae).

Griebenow Zachary H ZH Jones Susan C SC Eaton Tyler D TD

ZooKeys 20171229 725

Subterranean termites in the genus Heterotermes Froggatt (Rhinotermitidae: Heterotermitinae) are pantropical wood feeders capable of causing significant structural damage. The aim of this study was to investigate soldier morphological attributes in three Puerto Rican species of Heterotermes previously identified by sequencing of two mitochondrial genes and attributed to Heterotermes tenuis (Hagen), H. convexinotatus (Snyder) and H. cardini (Snyder). Soldiers (n ...[more]

PMID: 29362538

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Project description:BackgroundExpression quantitative trait loci (eQTL) have been identified using tissue or cell samples from diverse human populations, thus enhancing our understanding of regulation of gene expression. However, few studies have attempted to identify eQTL in racially admixed populations such as Hispanics.MethodsWe performed a systematic eQTL study to identify regulatory variants of gene expression in whole blood from 121 Puerto Rican children with (n = 63) and without (n = 58) asthma. Genome-wide genotyping was conducted using the Illumina Omni2.5M Bead Chip, and gene expression was assessed using the Illumina HT-12 microarray. After completing quality control, we performed a pair-wise genome analysis of ~15 K transcripts and ~1.3 M SNPs for both local and distal effects. This analysis was conducted under a regression framework adjusting for age, gender and principal components derived from both genotypic and mRNA data. We used a false discovery rate (FDR) approach to identify significant eQTL signals, which were next compared to top eQTL signals from existing eQTL databases. We then performed a pathway analysis for our top genes.ResultsWe identified 36,720 local pairs in 3,391 unique genes and 1,851 distal pairs in 446 unique genes at FDR <0.05, corresponding to unadjusted P values lower than 1.5x10-4 and 4.5x10-9, respectively. A significant proportion of genes identified in our study overlapped with those identified in previous studies. We also found an enrichment of disease-related genes in our eQTL list.ConclusionsWe present results from the first eQTL study in Puerto Rican children, who are members of a unique Hispanic cohort disproportionately affected with asthma, prematurity, obesity and other common diseases. Our study confirmed eQTL signals identified in other ethnic groups, while also detecting additional eQTLs unique to our study population. The identified eQTLs will help prioritize findings from future genome-wide association studies in Puerto Ricans.

Project description:Since the first Spanish settlers brought horses to America centuries ago, several local varieties and breeds have been established in the New World. These were generally a consequence of the admixture of the different breeds arriving from Europe. In some instances, local horses have been selectively bred for specific traits, such as appearance, endurance, strength, and gait. We looked at the genetics of two breeds, the Puerto Rican Non-Purebred (PRNPB) (also known as the "Criollo") horses and the Puerto Rican Paso Fino (PRPF), from the Caribbean Island of Puerto Rico. While it is reasonable to assume that there was a historic connection between the two, the genetic link between them has never been established. In our study, we started by looking at the genetic ancestry and diversity of current Puerto Rican horse populations using a 668 bp fragment of the mitochondrial DNA D-loop (HVR1) in 200 horses from 27 locations on the island. We then genotyped all 200 horses in our sample for the "gait-keeper" DMRT3 mutant allele previously associated with the paso gait especially cherished in this island breed. We also genotyped a subset of 24 samples with the Illumina Neogen Equine Community genome-wide array (65,000 SNPs). This data was further combined with the publicly available PRPF genomes from other studies. Our analysis show an undeniable genetic connection between the two varieties in Puerto Rico, consistent with the hypothesis that PRNPB horses represent the descendants of the original genetic pool, a mix of horses imported from the Iberian Peninsula and elsewhere in Europe. Some of the original founders of PRNRB population must have carried the "gait-keeper" DMRT3 allele upon arrival to the island. From this admixture, the desired traits were selected by the local people over the span of centuries. We propose that the frequency of the mutant "gait-keeper" allele originally increased in the local horses due to the selection for the smooth ride and other characters, long before the PRPF breed was established. To support this hypothesis, we demonstrate that PRNPB horses, and not the purebred PRPF, carry a signature of selection in the genomic region containing the DMRT3 locus to this day. The lack of the detectable signature of selection associated with the DMRT3 in the PRPF would be expected if this native breed was originally derived from the genetic pool of PRNPB horses established earlier and most of the founders already had the mutant allele. Consequently, selection specific to PRPF later focused on allels in other genes (including CHRM5, CYP2E1, MYH7, SRSF1, PAM, PRN and others) that have not been previously associated with the prized paso gait phenotype in Puerto Rico or anywhere else.

Dataset Information

Seeking quantitative morphological characters for species identification in soldiers of Puerto Rican Heterotermes (Dictyoptera, Blattaria, Termitoidae, Rhinotermitidae).

Publications

Seeking quantitative morphological characters for species identification in soldiers of Puerto Rican <i>Heterotermes</i> (Dictyoptera, Blattaria, Termitoidae, Rhinotermitidae).

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