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Detecting T Cell Activation Using a Varying Dimension Bayesian Model.


ABSTRACT: The detection of T cell activation is critical in many immunological assays. However, detecting T cell activation in live tissues remains a challenge due to highly noisy data. We developed a Bayesian probabilistic model to identify T cell activation based on calcium flux, a dramatic increase in intracellular calcium concentration that occurs during T cell activation. Because a T cell has unknown number of flux events, the implementation of posterior inference requires trans-dimensional posterior simulation. The model is able to detect calcium flux events at the single cell level from simulated data, as well as from noisy biological data.

SUBMITTER: Hu Z 

PROVIDER: S-EPMC5796679 | biostudies-literature | 2018

REPOSITORIES: biostudies-literature

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Detecting T Cell Activation Using a Varying Dimension Bayesian Model.

Hu Zicheng Z   Lancaster Jessica N JN   Ehrlich Lauren I R LIR   Müller Peter P  

Journal of applied statistics 20170216 4


The detection of T cell activation is critical in many immunological assays. However, detecting T cell activation in live tissues remains a challenge due to highly noisy data. We developed a Bayesian probabilistic model to identify T cell activation based on calcium flux, a dramatic increase in intracellular calcium concentration that occurs during T cell activation. Because a T cell has unknown number of flux events, the implementation of posterior inference requires trans-dimensional posterior  ...[more]

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