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Overcoming hydrodynamic challenges in suspension feeding by juvenile Mya arenaria clams.

ABSTRACT: We present some of the few suspension-feeding measurements and to our knowledge the first velocity-field measurements for early post-settlement juvenile bivalve clams. We verify and extend our experimental results with numerical simulations. For 1.8-2.8 mm shell length Mya arenaria clams, pumping rates ranged 0.03-0.22 ?l s-1, inhalant siphon Reynolds numbers (Re) ranged 0.16-0.79 and mean inhalant velocities ranged 0.8-3.2 mm s-1 Owing to the low Re at which they pump and the small diameters of their siphons, juvenile clams are subject to unique hydrodynamic challenges, including high siphon resistance and susceptibility to refiltration. At least three features of juvenile clam siphons differentiate them from those of adults-shorter inhalant siphon length, a more rapid increase in inhalant siphon diameter with shell length, and the presence of a prominent exhalant siphon extension. These features are probably adaptations to the challenges of suspension feeding at low Re.

SUBMITTER: Du Clos KT

PROVIDER: S-EPMC5805974 | biostudies-literature | 2018 Jan

REPOSITORIES: biostudies-literature

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Overcoming hydrodynamic challenges in suspension feeding by juvenile Mya arenaria clams.

Du Clos Kevin T KT Jiang Houshuo H

Journal of the Royal Society, Interface 20180101 138

We present some of the few suspension-feeding measurements and to our knowledge the first velocity-field measurements for early post-settlement juvenile bivalve clams. We verify and extend our experimental results with numerical simulations. For 1.8-2.8 mm shell length Mya arenaria clams, pumping rates ranged 0.03-0.22 μl s-1, inhalant siphon Reynolds numbers (Re) ranged 0.16-0.79 and mean inhalant velocities ranged 0.8-3.2 mm s-1 Owing to the low Re at ...[more]

PMID: 29367238

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Project description:In North America, a high mortality of soft-shell clams Mya arenaria was found to be related to the disease known as disseminated neoplasia (DN). Disseminated neoplasia is commonly recognized as a tetraploid disorder related to a disruption of the cell cycle. However, the molecular mechanisms by which hemocytes of clams are transformed in the course of DN remain by far unknown. This study aims at identifying the transcripts related to DN in soft shell clams' hemocytes using next generation of sequencing (Illumina HiSeq2000). This study mainly focuses on transcripts and molecular mechanisms involved in cell cycle. Using Illumina next generation of sequencing, more than 95,399,159 reads count with an average length of 45??bp was generated from three groups of hemocytes: (1) a healthy group with less than 10% of tetraploid cells; (2) an intermediate group with tetraploid hemocytes ranging between 10% and 50% and (3) a diseased group with more than 50% of tetraploid cells. After the reads were cleaned by removing the adapters, de novo assembly was performed on the sequences and more than 73,696 contigs were generated with a mean contig length estimated at 585?bp ranging from 189?bp to 14,773?bp. Once a Blastx search against NCBI Non Redundant database was performed and the duplicates removed, 18,378 annotated sequences matched known sequences, 3078 were hypothetical and 9002 were uncharacterized sequences. Fifty percent and 41% of known sequences match sequences from Mollusca and Gastropoda respectively. Among the bivalvia, 33%, 17%, 17% and 15% of the contigs match sequences from Ostreoida, Veneroida, Pectinoida and Mytiloida respectively. Gene ontology analysis showed that metabolic, cellular, transport, cell communication and cell cycle represent 33%, 15%, 9%, 8.5% and 7% respectively of the total biological process. Approximately 70% of the component process is related to intracellular process and 15% is linked to protein and ribonucleoprotein complex. Catalytic activities and binding molecular processes represent 39% and 33% of the total molecular functions. Interestingly, nucleic acid binding represents more than 18% of the total protein class. Transcripts involved in the molecular mechanisms of cell cycle are discussed providing new avenues for future investigations.

Dataset Information

Overcoming hydrodynamic challenges in suspension feeding by juvenile Mya arenaria clams.

Publications

Overcoming hydrodynamic challenges in suspension feeding by juvenile <i>Mya arenaria</i> clams.

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