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Generalized leaky integrate-and-fire models classify multiple neuron types.

ABSTRACT: There is a high diversity of neuronal types in the mammalian neocortex. To facilitate construction of system models with multiple cell types, we generate a database of point models associated with the Allen Cell Types Database. We construct a set of generalized leaky integrate-and-fire (GLIF) models of increasing complexity to reproduce the spiking behaviors of 645 recorded neurons from 16 transgenic lines. The more complex models have an increased capacity to predict spiking behavior of hold-out stimuli. We use unsupervised methods to classify cell types, and find that high level GLIF model parameters are able to differentiate transgenic lines comparable to electrophysiological features. The more complex model parameters also have an increased ability to differentiate between transgenic lines. Thus, creating simple models is an effective dimensionality reduction technique that enables the differentiation of cell types from electrophysiological responses without the need for a priori-defined features. This database will provide a set of simplified models of multiple cell types for the community to use in network models.

SUBMITTER: Teeter C

PROVIDER: S-EPMC5818568 | biostudies-literature | 2018 Feb

REPOSITORIES: biostudies-literature

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Generalized leaky integrate-and-fire models classify multiple neuron types.

Teeter Corinne C Iyer Ramakrishnan R Menon Vilas V Gouwens Nathan N Feng David D Berg Jim J Szafer Aaron A Cain Nicholas N Zeng Hongkui H Hawrylycz Michael M Koch Christof C Mihalas Stefan S

Nature communications 20180219 1

There is a high diversity of neuronal types in the mammalian neocortex. To facilitate construction of system models with multiple cell types, we generate a database of point models associated with the Allen Cell Types Database. We construct a set of generalized leaky integrate-and-fire (GLIF) models of increasing complexity to reproduce the spiking behaviors of 645 recorded neurons from 16 transgenic lines. The more complex models have an increased capacity to predict spiking behavior of hold-ou ...[more]

PMID: 29459723

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Project description:Engineering neural networks to perform specific tasks often represents a monumental challenge in determining network architecture and parameter values. In this work, we extend our previously-developed method for tuning networks of non-spiking neurons, the "Functional subnetwork approach" (FSA), to the tuning of networks composed of spiking neurons. This extension enables the direct assembly and tuning of networks of spiking neurons and synapses based on the network's intended function, without the use of global optimization or machine learning. To extend the FSA, we show that the dynamics of a generalized linear integrate and fire (GLIF) neuron model have fundamental similarities to those of a non-spiking leaky integrator neuron model. We derive analytical expressions that show functional parallels between: (1) A spiking neuron's steady-state spiking frequency and a non-spiking neuron's steady-state voltage in response to an applied current; (2) a spiking neuron's transient spiking frequency and a non-spiking neuron's transient voltage in response to an applied current; and (3) a spiking synapse's average conductance during steady spiking and a non-spiking synapse's conductance. The models become more similar as additional spiking neurons are added to each population "node" in the network. We apply the FSA to model a neuromuscular reflex pathway two different ways: Via non-spiking components and then via spiking components. These results provide a concrete example of how a single non-spiking neuron may model the average spiking frequency of a population of spiking neurons. The resulting model also demonstrates that by using the FSA, models can be constructed that incorporate both spiking and non-spiking units. This work facilitates the construction of large networks of spiking neurons and synapses that perform specific functions, for example, those implemented with neuromorphic computing hardware, by providing an analytical method for directly tuning their parameters without time-consuming optimization or learning.

Dataset Information

Generalized leaky integrate-and-fire models classify multiple neuron types.

Publications

Generalized leaky integrate-and-fire models classify multiple neuron types.

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