Dataset Information

Recruiting Conventional Tree Architecture Models into State-of-the-Art LiDAR Mapping for Investigating Tree Growth Habits in Structure.

ABSTRACT: Mensuration of tree growth habits is of considerable importance for understanding forest ecosystem processes and forest biophysical responses to climate changes. However, the complexity of tree crown morphology that is typically formed after many years of growth tends to render it a non-trivial task, even for the state-of-the-art 3D forest mapping technology-light detection and ranging (LiDAR). Fortunately, botanists have deduced the large structural diversity of tree forms into only a limited number of tree architecture models, which can present a-priori knowledge about tree structure, growth, and other attributes for different species. This study attempted to recruit Hallé architecture models (HAMs) into LiDAR mapping to investigate tree growth habits in structure. First, following the HAM-characterized tree structure organization rules, we run the kernel procedure of tree species classification based on the LiDAR-collected point clouds using a support vector machine classifier in the leave-one-out-for-cross-validation mode. Then, the HAM corresponding to each of the classified tree species was identified based on expert knowledge, assisted by the comparison of the LiDAR-derived feature parameters. Next, the tree growth habits in structure for each of the tree species were derived from the determined HAM. In the case of four tree species growing in the boreal environment, the tests indicated that the classification accuracy reached 85.0%, and their growth habits could be derived by qualitative and quantitative means. Overall, the strategy of recruiting conventional HAMs into LiDAR mapping for investigating tree growth habits in structure was validated, thereby paving a new way for efficiently reflecting tree growth habits and projecting forest structure dynamics.

SUBMITTER: Lin Y

PROVIDER: S-EPMC5826307 | biostudies-literature | 2018

REPOSITORIES: biostudies-literature

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Recruiting Conventional Tree Architecture Models into State-of-the-Art LiDAR Mapping for Investigating Tree Growth Habits in Structure.

Lin Yi Y Jiang Miao M Pellikka Petri P Heiskanen Janne J

Frontiers in plant science 20180220

Mensuration of tree growth habits is of considerable importance for understanding forest ecosystem processes and forest biophysical responses to climate changes. However, the complexity of tree crown morphology that is typically formed after many years of growth tends to render it a non-trivial task, even for the state-of-the-art 3D forest mapping technology-light detection and ranging (LiDAR). Fortunately, botanists have deduced the large structural diversity of tree forms into only a limited n ...[more]

PMID: 29515616

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Project description:An international data science challenge, called National Ecological Observatory Network-National Institute of Standards and Technology data science evaluation, was set up in autumn 2017 with the goal to improve the use of remote sensing data in ecological applications. The competition was divided into three tasks: (1) individual tree crown (ITC) delineation, for identifying the location and size of individual trees; (2) alignment between field surveyed trees and ITCs delineated on remote sensing data; and (3) tree species classification. In this paper, the methods and results of team Fondazione Edmund Mach (FEM) are presented. The ITC delineation (Task 1 of the challenge) was done using a region growing method applied to a near-infrared band of the hyperspectral images. The optimization of the parameters of the delineation algorithm was done in a supervised way on the basis of the Jaccard score using the training set provided by the organizers. The alignment (Task 2) between the delineated ITCs and the field surveyed trees was done using the Euclidean distance among the position, the height, and the crown radius of the ITCs and the field surveyed trees. The classification (Task 3) was performed using a support vector machine classifier applied to a selection of the hyperspectral bands and the canopy height model. The selection of the bands was done using the sequential forward floating selection method and the Jeffries Matusita distance. The results of the three tasks were very promising: team FEM ranked first in the data science competition in Task 1 and 2, and second in Task 3. The Jaccard score of the delineated crowns was 0.3402, and the results showed that the proposed approach delineated both small and large crowns. The alignment was correctly done for all the test samples. The classification results were good (overall accuracy of 88.1%, kappa accuracy of 75.7%, and mean class accuracy of 61.5%), although the accuracy was biased toward the most represented species.

Project description:BackgroundChronic kidney disease (CKD) is a progressive and usually irreversible disease. Different types of outcomes are of interest in the course of CKD such as time-to-dialysis, transplantation or decline of the glomerular filtration rate (GFR). Statistical analyses aiming at investigating the association between these outcomes and risk factors raise a number of methodological issues. The objective of this study was to give an overview of these issues and to highlight some statistical methods that can address these topics.MethodsA literature review of statistical methods published between 2002 and 2012 to investigate risk factors of CKD outcomes was conducted within the Scopus database. The results of the review were used to identify important methodological issues as well as to discuss solutions for each type of CKD outcome.ResultsThree hundred and four papers were selected. Time-to-event outcomes were more often investigated than quantitative outcome variables measuring kidney function over time. The most frequently investigated events in survival analyses were all-cause death, initiation of kidney replacement therapy, and progression to a specific value of GFR. While competing risks were commonly accounted for, interval censoring was rarely acknowledged when appropriate despite existing methods. When the outcome of interest was the quantitative decline of kidney function over time, standard linear models focussing on the slope of GFR over time were almost as often used as linear mixed models which allow various numbers of repeated measurements of kidney function per patient. Informative dropout was accounted for in some of these longitudinal analyses.ConclusionsThis study provides a broad overview of the statistical methods used in the last ten years for investigating risk factors of CKD progression, as well as a discussion of their limitations. Some existing potential alternatives that have been proposed in the context of CKD or in other contexts are also highlighted.

Project description:Conventional spacecraft Guidance, Navigation, and Control (GNC) architectures have been designed to receive and execute commands from ground control with minimal automation and autonomy onboard spacecraft. In contrast, Artificial Intelligence (AI)-based systems can allow real-time decision-making by considering system information that is difficult to model and incorporate in the conventional decision-making process involving ground control or human operators. With growing interests in on-orbit services with manipulation, the conventional GNC faces numerous challenges in adapting to a wide range of possible scenarios, such as removing unknown debris, potentially addressed using emerging AI-enabled robotic technologies. However, a complete paradigm shift may need years' efforts. As an intermediate solution, we introduce a novel visual GNC system with two state-of-the-art AI modules to replace the corresponding functions in the conventional GNC system for on-orbit manipulation. The AI components are as follows: (i) A Deep Learning (DL)-based pose estimation algorithm that can estimate a target's pose from two-dimensional images using a pre-trained neural network without requiring any prior information on the dynamics or state of the target. (ii) A technique for modeling and controlling space robot manipulator trajectories using probabilistic modeling and reproduction to previously unseen situations to avoid complex trajectory optimizations on board. This also minimizes the attitude disturbances of spacecraft induced on it due to the motion of the robot arm. This architecture uses a centralized camera network as the main sensor, and the trajectory learning module of the 7 degrees of freedom robotic arm is integrated into the GNC system. The intelligent visual GNC system is demonstrated by simulation of a conceptual mission-AISAT. The mission is a micro-satellite to carry out on-orbit manipulation around a non-cooperative CubeSat. The simulation shows how the GNC system works in discrete-time simulation with the control and trajectory planning are generated in Matlab/Simulink. The physics rendering engine, Eevee, renders the whole simulation to provide a graphic realism for the DL pose estimation. In the end, the testbeds developed to evaluate and demonstrate the GNC system are also introduced. The novel intelligent GNC system can be a stepping stone toward future fully autonomous orbital robot systems.

Dataset Information

Recruiting Conventional Tree Architecture Models into State-of-the-Art LiDAR Mapping for Investigating Tree Growth Habits in Structure.

Publications

Recruiting Conventional Tree Architecture Models into State-of-the-Art LiDAR Mapping for Investigating Tree Growth Habits in Structure.

Similar Datasets

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