Dataset Information

Biological conversion of aromatic monolignol compounds by a Pseudomonas isolate from sediments of the Baltic Sea.

ABSTRACT: Bacterial strains were isolated from the sediments of the Baltic Sea using ferulic acid, guaiacol or a lignin-rich softwood waste stream as substrate. In total nine isolates were obtained, five on ferulic acid, two on guaiacol and two on a lignin-rich softwood stream as a carbon source. Three of the isolates were found to be Pseudomonas sp. based on 16S rRNA sequencing. Among them, isolate 9.1, which showed the fastest growth in defined M9 medium, was tentatively identified as a Pseudomonas deceptionensis strain based on the gyrB sequencing. The growth of isolate 9.1 was further examined on six selected lignin model compounds (ferulate, p-coumarate, benzoate, syringate, vanillin and guaiacol) from different upper funneling aromatic pathways and was found able to grow on four out of these six compounds. No growth was detected on syringate and guaiacol. The highest specific growth and uptake rates were observed for benzoate (0.3 h-1 and 4.2 mmol g CDW-1 h-1) whereas the lowest were for the compounds from the coniferyl branch. Interestingly, several pathway intermediates were excreted during batch growth. Vanillyl alcohol was found to be excreted during growth on vanillin. Several other intermediates like cis,cis-muconate, catechol, vanillate and 4-hydroxybenzoate from the known bacterial catabolic pathways were excreted during growth on the model compounds.

SUBMITTER: Ravi K

PROVIDER: S-EPMC5834416 | biostudies-literature | 2018 Mar

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Biological conversion of aromatic monolignol compounds by a Pseudomonas isolate from sediments of the Baltic Sea.

Ravi Krithika K García-Hidalgo Javier J Nöbel Matthias M Gorwa-Grauslund Marie F MF Lidén Gunnar G

AMB Express 20180302 1

Bacterial strains were isolated from the sediments of the Baltic Sea using ferulic acid, guaiacol or a lignin-rich softwood waste stream as substrate. In total nine isolates were obtained, five on ferulic acid, two on guaiacol and two on a lignin-rich softwood stream as a carbon source. Three of the isolates were found to be Pseudomonas sp. based on 16S rRNA sequencing. Among them, isolate 9.1, which showed the fastest growth in defined M9 medium, was tentatively identified as a Pseudomonas dece ...[more]

PMID: 29500726

Similar Datasets

Project description:The study aimed to determine the level of mercury (Hg) and its labile and stable forms in the surface sediments of the Baltic Sea. The work considers the impact of current and historical sources of Hg on sediment pollution, together with the influence of different environmental parameters, including water inflows from the North Sea. Surface sediments (top 5 cm) were collected in 2016-2017 at 91 stations located in different areas of the Baltic Sea, including Belt Sea, Arkona Basin, Bornholm Basin, Gdańsk Basin, West Gotland Basin, East Gotland Basin, and the Bothnian Sea. Besides, the particulate matter suspended in the surface and near-bottom water was also collected. The analysis of total Hg concentration and individual Hg forms in collected samples was carried out using a 5-step thermodesorption method. This method allows for the identification of three labile and thus biologically available, fractions of Hg, which are mercury halides, organic Hg, mercury oxide and sulphate. Two stable fractions, mercury sulphide and residual Hg, were also determined. The highest Hg concentrations, reaching 341 ng g-1, were measured in the highly industrialised Kiel Bay, which was additionally a munition dumping site during and after World War II. High Hg level, ranging from 228 to 255 ng g-1, was also recorded in the surface sediments of the Arkona Basin, which was a result of the cumulative effect of several factors, such as deposition of Hg-rich riverine matter, favourable hydrodynamic conditions and military activities in the past. The relatively elevated Hg concentrations, varying from 60 to 264 ng g-1, were found in the Gdańsk Basin, a region under strong anthropopressure and dominated by soft sediments. The sum of labile Hg in sediments was high and averaged 67% (with the domination of organic Hg compounds), which means that a large part of Hg can be released to the water column. It was found that the water inflows from the North Sea intensify the remobilisation of Hg and its transformation into bioavailable labile forms. As a consequence, the load of Hg introduced into the trophic chain can increase. Despite the significant reduction of Hg emission into the Baltic in the last decades, surface sediments can be an important secondary Hg source in the marine ecosystem. This is especially dangerous in the case of the western Baltic Sea.

Dataset Information

Biological conversion of aromatic monolignol compounds by a Pseudomonas isolate from sediments of the Baltic Sea.

Publications

Biological conversion of aromatic monolignol compounds by a Pseudomonas isolate from sediments of the Baltic Sea.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets