PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies.
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ABSTRACT:
SUBMITTER: Mallet L
PROVIDER: S-EPMC5860033 | biostudies-literature | 2017 Oct
REPOSITORIES: biostudies-literature
Publications
PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies.
Mallet Ludovic L Bitard-Feildel Tristan T Cerutti Franck F Chiapello Hélène H
Bioinformatics (Oxford, England) 20171001 20
<h4>Motivation</h4>Genome sequencing projects sometimes uncover more organisms than expected, especially for complex and/or non-model organisms. It is therefore useful to develop software to identify mix of organisms from genome sequence assemblies.<h4>Results</h4>Here we present PhylOligo, a new package including tools to explore, identify and extract organism-specific sequences in a genome assembly using the analysis of their DNA compositional characteristics.<h4>Availability and implementatio ...[more]
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