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ConKit: a python interface to contact predictions.

ABSTRACT: Recent advances in protein residue contact prediction algorithms have led to the emergence of many new methods and a variety of file formats. We present ConKit , an open source, modular and extensible Python interface which allows facile conversion between formats and provides an interface to analyses of sequence alignments and sets of contact predictions.ConKit is available via the Python Package Index. The documentation can be found at http://www.conkit.org . ConKit is licensed under the BSD 3-Clause.hlfsimko@liverpool.ac.uk or drigden@liverpool.ac.uk.Supplementary data are available at Bioinformatics online.

SUBMITTER: Simkovic F

PROVIDER: S-EPMC5870551 | biostudies-literature | 2017 Jul

REPOSITORIES: biostudies-literature

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ConKit: a python interface to contact predictions.

Simkovic Felix F Thomas Jens M H JMH Rigden Daniel J DJ

Bioinformatics (Oxford, England) 20170701 14

<h4>Summary</h4>Recent advances in protein residue contact prediction algorithms have led to the emergence of many new methods and a variety of file formats. We present ConKit , an open source, modular and extensible Python interface which allows facile conversion between formats and provides an interface to analyses of sequence alignments and sets of contact predictions.<h4>Availability and implementation</h4>ConKit is available via the Python Package Index. The documentation can be found at ht ...[more]

PMID: 28369168

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