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De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution.

ABSTRACT: Tunicates are marine invertebrates that compose the closest phylogenetic group to the vertebrates. These chordates present a particularly diverse range of regenerative abilities and life-history strategies. Consequently, tunicates provide an extraordinary perspective into the emergence and diversity of these traits. Here we describe the genome sequencing, annotation and analysis of the Stolidobranchian Botrylloides leachii. We have produced a high-quality 159?Mb assembly, 82% of the predicted 194?Mb genome. Analysing genome size, gene number, repetitive elements, orthologs clustering and gene ontology terms show that B. leachii has a genomic architecture similar to that of most solitary tunicates, while other recently sequenced colonial ascidians have undergone genome expansion. In addition, ortholog clustering has identified groups of candidate genes for the study of colonialism and whole-body regeneration. By analysing the structure and composition of conserved gene linkages, we observed examples of cluster breaks and gene dispersions, suggesting that several lineage-specific genome rearrangements occurred during tunicate evolution. We also found lineage-specific gene gain and loss within conserved cell-signalling pathways. Such examples of genetic changes within conserved cell-signalling pathways commonly associated with regeneration and development that may underlie some of the diverse regenerative abilities observed in tunicates. Overall, these results provide a novel resource for the study of tunicates and of colonial ascidians.

SUBMITTER: Blanchoud S

PROVIDER: S-EPMC5882950 | biostudies-literature | 2018 Apr

REPOSITORIES: biostudies-literature

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De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution.

Blanchoud Simon S Rutherford Kim K Zondag Lisa L Gemmell Neil J NJ Wilson Megan J MJ

Scientific reports 20180403 1

Tunicates are marine invertebrates that compose the closest phylogenetic group to the vertebrates. These chordates present a particularly diverse range of regenerative abilities and life-history strategies. Consequently, tunicates provide an extraordinary perspective into the emergence and diversity of these traits. Here we describe the genome sequencing, annotation and analysis of the Stolidobranchian Botrylloides leachii. We have produced a high-quality 159 Mb assembly, 82% of the predicted 19 ...[more]

PMID: 29615780

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De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution.

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De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution.

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