Unknown

Dataset Information

0

Scabies in residential care homes: Modelling, inference and interventions for well-connected population sub-units.


ABSTRACT: In the context of an ageing population, understanding the transmission of infectious diseases such as scabies through well-connected sub-units of the population, such as residential care homes, is particularly important for the design of efficient interventions to mitigate against the effects of those diseases. Here, we present a modelling methodology based on the efficient solution of a large-scale system of linear differential equations that allows statistical calibration of individual-based random models to real data on scabies in residential care homes. In particular, we review and benchmark different numerical methods for the integration of the differential equation system, and then select the most appropriate of these methods to perform inference using Markov chain Monte Carlo. We test the goodness-of-fit of this model using posterior predictive intervals and propagate forward the resulting parameter uncertainty in a Bayesian framework to consider the economic cost of delayed interventions against scabies, quantifying the benefits of prompt action in the event of detection. We also revisit the previous methodology used to assess the safety of treatments in small population sub-units-in this context ivermectin-and demonstrate that even a very slight relaxation of the implicit assumption of homogeneous death rates significantly increases the plausibility of the hypothesis that ivermectin does not cause excess mortality based upon the data of Barkwell and Shields.

SUBMITTER: Kinyanjui T 

PROVIDER: S-EPMC5898763 | biostudies-literature | 2018 Mar

REPOSITORIES: biostudies-literature

altmetric image

Publications

Scabies in residential care homes: Modelling, inference and interventions for well-connected population sub-units.

Kinyanjui Timothy T   Middleton Jo J   Güttel Stefan S   Cassell Jackie J   Ross Joshua J   House Thomas T  

PLoS computational biology 20180326 3


In the context of an ageing population, understanding the transmission of infectious diseases such as scabies through well-connected sub-units of the population, such as residential care homes, is particularly important for the design of efficient interventions to mitigate against the effects of those diseases. Here, we present a modelling methodology based on the efficient solution of a large-scale system of linear differential equations that allows statistical calibration of individual-based r  ...[more]

Similar Datasets

| S-EPMC6532717 | biostudies-literature
| S-EPMC6056451 | biostudies-other
| S-EPMC9241990 | biostudies-literature
2018-12-21 | GSE93961 | GEO
| S-EPMC8972713 | biostudies-literature
| S-EPMC6426261 | biostudies-literature
| S-EPMC6435756 | biostudies-literature
| S-EPMC3534387 | biostudies-literature
| S-EPMC7178282 | biostudies-literature
| S-EPMC10548539 | biostudies-literature