Dataset Information

Poecilia vivipara Bloch & Schneider, 1801 (Cyprinodontiformes, Poeciliidae), a guppy in an oceanic archipelago: from where did it come?

ABSTRACT: Poecilia vivipara, a small euryhaline guppy is reported at the Maceió River micro-basin in the Fernando de Noronha oceanic archipelago, northeast Brazil. However, the origin (human-mediated or natural dispersal) of this insular population is still controversial. The present study investigates how this population is phylogenetically related to the surrounding continental populations using the cytochrome oxidase I mitochondrial gene from eleven river basins in South America. Our phylogenetic reconstruction showed a clear geographical distribution arrangement of P. vivipara lineages. The Fernando de Noronha haplotype fell within the 'north' clade, closely related to a shared haplotype between the Paraíba do Norte and Potengi basins; the geographically closest continental drainages. Our phylogenetic reconstruction also showed highly divergent lineages, suggesting that P. vivipara may represent a species complex along its wide distribution. Regarding to the insular population, P. vivipara may have been intentionally introduced to the archipelago for the purpose of mosquito larvae control during the occupation of a U.S. military base following World War II. However, given the euryhaline capacity of P. vivipara, a potential scenario of natural (passive or active) dispersal cannot be ruled out.

SUBMITTER: Berbel-Filho WM

PROVIDER: S-EPMC5904379 | biostudies-literature | 2018

REPOSITORIES: biostudies-literature

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<i>Poecilia vivipara</i> Bloch & Schneider, 1801 (Cyprinodontiformes, Poeciliidae), a guppy in an oceanic archipelago: from where did it come?

Berbel-Filho Waldir Miron WM Barros-Neto Luciano Freitas LF Dias Ricardo Marques RM Mendes Liana Figueiredo LF Figueiredo Carlos Augusto Assumpção CAA Torres Rodrigo Augusto RA Lima Sergio Maia Queiroz SMQ

ZooKeys 20180326 746

<i>Poecilia vivipara</i>, a small euryhaline guppy is reported at the Maceió River micro-basin in the Fernando de Noronha oceanic archipelago, northeast Brazil. However, the origin (human-mediated or natural dispersal) of this insular population is still controversial. The present study investigates how this population is phylogenetically related to the surrounding continental populations using the cytochrome oxidase I mitochondrial gene from eleven river basins in South America. Our phylogeneti ...[more]

PMID: 29674897

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Project description:BackgroundNext-generation sequencing is providing researchers with a relatively fast and affordable option for developing genomic resources for organisms that are not among the traditional genetic models. Here we present a de novo assembly of the guppy (Poecilia reticulata) transcriptome using 454 sequence reads, and we evaluate potential uses of this transcriptome, including detection of sex-specific transcripts and deployment as a reference for gene expression analysis in guppies and a related species. Guppies have been model organisms in ecology, evolutionary biology, and animal behaviour for over 100 years. An annotated transcriptome and other genomic tools will facilitate understanding the genetic and molecular bases of adaptation and variation in a vertebrate species with a uniquely well known natural history.ResultsWe generated approximately 336 Mbp of mRNA sequence data from male brain, male body, female brain, and female body. The resulting 1,162,670 reads assembled into 54,921 contigs, creating a reference transcriptome for the guppy with an average read depth of 28×. We annotated nearly 40% of this reference transcriptome by searching protein and gene ontology databases. Using this annotated transcriptome database, we identified candidate genes of interest to the guppy research community, putative single nucleotide polymorphisms (SNPs), and male-specific expressed genes. We also showed that our reference transcriptome can be used for RNA-sequencing-based analysis of differential gene expression. We identified transcripts that, in juveniles, are regulated differently in the presence and absence of an important predator, Rivulus hartii, including two genes implicated in stress response. For each sample in the RNA-seq study, >50% of high-quality reads mapped to unique sequences in the reference database with high confidence. In addition, we evaluated the use of the guppy reference transcriptome for gene expression analyses in a congeneric species, the sailfin molly (Poecilia latipinna). Over 40% of reads from the sailfin molly sample aligned to the guppy transcriptome.ConclusionsWe show that next-generation sequencing provided a reliable and broad reference transcriptome. This resource allowed us to identify candidate gene variants, SNPs in coding regions, and sex-specific gene expression, and permitted quantitative analysis of differential gene expression.

Dataset Information

Poecilia vivipara Bloch & Schneider, 1801 (Cyprinodontiformes, Poeciliidae), a guppy in an oceanic archipelago: from where did it come?

Publications

<i>Poecilia vivipara</i> Bloch & Schneider, 1801 (Cyprinodontiformes, Poeciliidae), a guppy in an oceanic archipelago: from where did it come?

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