Browse
Submit Data
Databases
API
Help

Dataset Information

24 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Cryptic species in a well-known habitat: applying taxonomics to the amphipod genus Epimeria (Crustacea, Peracarida).

ABSTRACT: Taxonomy plays a central role in biological sciences. It provides a communication system for scientists as it aims to enable correct identification of the studied organisms. As a consequence, species descriptions should seek to include as much available information as possible at species level to follow an integrative concept of 'taxonomics'. Here, we describe the cryptic species Epimeria frankei sp. nov. from the North Sea, and also redescribe its sister species, Epimeria cornigera. The morphological information obtained is substantiated by DNA barcodes and complete nuclear 18S rRNA gene sequences. In addition, we provide, for the first time, full mitochondrial genome data as part of a metazoan species description for a holotype, as well as the neotype. This study represents the first successful implementation of the recently proposed concept of taxonomics, using data from high-throughput technologies for integrative taxonomic studies, allowing the highest level of confidence for both biodiversity and ecological research.

SUBMITTER: Beermann J

PROVIDER: S-EPMC5931980 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Leucothoe kawesqari, a new amphipod from Bernardo O'Higgins National Park (Chile), with remarks on the genus in the Magellan Region (Crustacea, Peracarida).

Project description:Although the genus Leucothoe has been reported repeatedly in the Magellan Region, the citations in the Channels and Fjords Ecoregion were either unidentified or attributed to the previously considered cosmopolitan Leucothoe spinicarpa. In this work, Leucothoe kawesqari sp. n. is described, which can be distinguished from other species of the genus in the Southern Ocean by having eyes present, epimeral plates with no setae, anterior coxae not acutely produced or excavate, coxa 5 slightly bilobed, accessory flagellum present, mandibular palp article 3 shorter than ½ article 2, pereopods 5-7 basis expanded, ovoid, posterior margin weakly crenulate and telson apex irregularly truncated. The new species was found in hard substrates, both unvegetated and with macroalgae, mainly in kelp forest of Macrocystis pyrifera.

| S-EPMC4714056 | biostudies-literature

A new genus and species of Sphyrapodidae (Crustacea, Peracarida, Tanaidacea) from the southern coast of the South Korea.

Project description:Wandogarida canaliculagen. n et sp. n. (Tanaidacea, Sphyrapodidae) is described from the southern coast of Korea (NW Pacific). The genus is included in the subfamily Sphyrapodinae Gu?u, 1980 by having a mandible lacking a palp. It has a close affinity with the genus Poligarida Bamber & Marshall, 2013 in the third pereonite having lateral pointed apophyses, the antennule of males with fringes of aesthetascs on articles 1 and 2 of the outer flagellum and the antenna with an elongate article 2. However, it is distinguished from Poligarida by having a maxillular palp. Wandogaridagen. n. can be differentiated from other genera within the subfamily Sphyrapodinae by the unique shape characterised by the male's antennule article 1 with its rough denticles and a deep groove, pleonites each with a ventral hyposphenium, the maxillule with uniarticulate palp and the presence of prominent sexual dimorphism in the mouthparts. An identification key to the five genera of the subfamily Sphyrapodinae is presented.

| S-EPMC5904336 | biostudies-literature

Cryptic species in putative ancient asexual darwinulids (Crustacea, Ostracoda).

Project description:Fully asexually reproducing taxa lack outcrossing. Hence, the classic Biological Species Concept cannot be applied.We used DNA sequences from the mitochondrial COI gene and the nuclear ITS2 region to check species boundaries according to the evolutionary genetic (EG) species concept in five morphospecies in the putative ancient asexual ostracod genera, Penthesilenula and Darwinula, from different continents. We applied two methods for detecting cryptic species, namely the K/? method and the General Mixed Yule Coalescent model (GMYC). We could confirm the existence of species in all five darwinulid morphospecies and additional cryptic diversity in three morphospecies, namely in Penthesilenula brasiliensis, Darwinula stevensoni and in P. aotearoa. The number of cryptic species within one morphospecies varied between seven (P. brasiliensis), five to six (D. stevensoni) and two (P. aotearoa), respectively, depending on the method used. Cryptic species mainly followed continental distributions. We also found evidence for coexistence at the local scale for Brazilian cryptic species of P. brasiliensis and P. aotearoa. Our ITS2 data confirmed that species exist in darwinulids but detected far less EG species, namely two to three cryptic species in P. brasiliensis and no cryptic species at all in the other darwinulid morphospecies.Our results clearly demonstrate that both species and cryptic diversity can be recognized in putative ancient asexual ostracods using the EG species concept, and that COI data are more suitable than ITS2 for this purpose. The discovery of up to eight cryptic species within a single morphospecies will significantly increase estimates of biodiversity in this asexual ostracod group. Which factors, other than long-term geographic isolation, are important for speciation processes in these ancient asexuals remains to be investigated.

| S-EPMC3389007 | biostudies-literature

Collecting and preserving marine and freshwater isopoda (crustacea: peracarida).

Project description:BACKGROUND:Isopoda are the most diverse Crustacea. In order to encourage the study of isopod crustaceans and their use in biodiversity studies, systematics, ecology, physiology and more, one needs to know who the isopods are and where to find them. NEW INFORMATION:This is a short "how to" guide focusing on the free-living marine and freshwater isopods: where they live and how to collect and preserve them. The tools and techniques described here are simple, but invaluable in accessing the natural history of these remarkable creatures.

| S-EPMC4442250 | biostudies-literature

A new species of Paratanais Dana, 1852 (Crustacea, Peracarida, Tanaidacea, Paratanaidae) from Puerto Rico, northwestern Atlantic.

Project description:Paratanais rosadi sp. n. described from Puerto Rican coastal waters represents the first species of the genus from the northwestern Atlantic. It is distinguished from the other Paratanais species by a combination of characters, including article-2 of the maxilliped palp with a geniculate, finely-serrulate seta on inner margin; chela with stiff, geniculate, seta arising from propodus between fixed finger and dactylus and with short, stout, finely serrulate, seta on inner distal face of propodus adjacent to base of dactylus; carpus of pereopods 4-6 having three, instead of four stout modified spiniform setae distally, uropodal exopod distinctly shorter than endopodal article-1; and uropodal endopod with articles of about of equal in length. A key for the separation of Paratanais species from the Atlantic Ocean is presented.

| S-EPMC3978231 | biostudies-literature

A new species of Numbakullidae Gutu & Heard, 2002 (Tanaidacea, Peracarida, Crustacea) from the Great Barrier Reef, Australia.

Project description:A new species of Numbakulla Gu?u & Heard, 2002 (Tanaidacea) is described from Heron Island (southern Great Barrier Reef, Queensland) collected during the Census of Coral Reefs Ecosystem (CReefs) program. The new species is the third member of the family and can be recognized by the combination of characters as: length/width ratio of the body, which is 6:7, pereonite 4 longer than the rest, the presence of eyes, a blunt rostrum, antenna article 2 elongated, cheliped carpus with row of inner setae, pereopod 6 carpus with spines, pleopod endopod with denticles.

| S-EPMC3800784 | biostudies-literature

<i>Carinacuma umesi</i>, a new genus and species of bodotriid cumacean (Crustacea: Malacostraca: Peracarida) from shallow waters of the Maryland Coastal Bays, Mid-Atlantic region, USA.

Project description:Carinacuma, a new bodotriid cumacean genus, is diagnosed to receive Spilocuma watlingi Omholt & Heard as its type species and C. umesi sp. nov., described from shallow waters (0.8 to 2.8 m) on the Mid-Atlantic coast of North America. Carinacuma gen. nov. has its closest affinities to the North American genera Spilocuma and Mancocuma, but can be distinguished from them and the other genera within the subfamily Vaunthompsoniinae by a combination of characters, including the presence of a dorsal carina or keel on pereonite 3 of the female, morphology of the antenna, absence of pleopods in the male, and the setation and segmentation of the uropods. Carinacuma umesi sp. nov., can be differentiated from its northern Gulf of Mexico cognate, C. watlingi comb. nov. by several characters, including: (1) maxilliped 3 carpus of female with inner margin bearing four to five simple setae, (2) uropod peduncle of female with inner margin bearing one sub-distal micro-serrate seta with single sub-terminal medial setule, (3) male antennule peduncle articles 1-2 sub-equal length, and (4) male antennule accessory flagellum slightly longer than basal article of main flagellum. A key to the five known males lacking pleopods within Vaunthompsoniinae is provided.

| S-EPMC8395576 | biostudies-literature

Tanaella quintanai, a new deep-water tanaellid (Crustacea: Peracarida: Tanaidacea) from the Colombian Caribbean Coast, with a key to the species of the genus Tanaella Norman & Stebbing, 1886.

Project description:A new tanaidacean, Tanaella quintanai sp. nov., is described based on specimens collected from depths of 1,598 to 2,853 m during 2014-2015. The new species appears to be most closely related to the western Atlantic species, T. kroyeri and T. mclellandi. Tanaella quintanai can be separated from the two former, as well as from the other members of the genus by a combination of characters, including (1) a labium with apical lobe bearing one blunt seta (2) a cheliped with the inner margin of the dactylus bearing a sub-proximal bipinnate seta, (3) pereopods 1-3 with basis having sub-dorsoproximal and sub-ventroproximal margins setulose, (4) pereopods 4-6 with basis having ventroproximal margin setulose, (5) pereopods 4-6 with unguis bearing two parallel rows of small setules, and (6) a pleotelson as long as pleonites 1-5 combined. A key separating the currently recognized species of Tanaella is presented.

| S-EPMC6764364 | biostudies-literature

Discovery of a new genus and species of dogielinotid amphipod (Crustacea: Amphipoda: Dogielinotidae) from the Nipa palm in Thailand, with an updated key to the genera.

Project description:During a scientific survey, a new genus of the dogielinotid amphipoda was found in the Nipa palm (Nypa fruticans) in Bang Krachao Urban Oasis, Samut Prakan Province, Thailand. We placed this new genus, Allorchestoides gen. nov., within the family Dogielinotidae. The new taxa can be easily distinguished from the remaining genera by differences in the incisor of the left and right mandibles, apical robust setae of the maxilla 1, and the large coxa and strong obtuse palm in the female gnathopod 1. The type species of Allorchestoides gen. nov., Allorchestoides rosea n. sp., is described here in, with an updated key to the genera of the family Dogielinotidae.

| S-EPMC6188628 | biostudies-literature

Chondrochelia Gutu, 2016 (Crustacea, Peracarida, Tanaidacea, Leptocheliidae) from North America: new species, redescription and distribution using morphological and molecular data

Project description:Until now, four species of the genus ChondrocheliaGuţu, 2016 have been recorded from America. Using morphological and molecular data, we were able to recognize and describe two new species, Chondrochelia caribensis sp. nov. from the Mexican Caribbean and Chondrochelia winfieldi sp. nov. from the Gulf of Mexico. We found significant genetic divergence values between species based on the nucleotide sequences of cytochrome oxidase subunit I to support the morphological data. Also, the range of distribution of two species: Chondrochelia mexicana (Jarquín-González, García-Madrigal & Carrera-Parra, 2015) and Chondrochelia ortizi (Jarquín-González, 2016), were expanded within their described geographic regions. In contrast, the supposed distribution of the Brazilian C. dubia in the Mexican Caribbean and the Gulf of Mexico was rejected. Additionally, Chondrochelia algicola (Harger, 1878) was redescribed based upon type material. Minute details and ornamentation of some structures of three species were examined using SEM.

| S-EPMC8785663 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data