Unknown

Dataset Information

0

Identification and Single-Cell Functional Characterization of an Endodermally Biased Pluripotent Substate in Human Embryonic Stem Cells.


ABSTRACT: Human embryonic stem cells (hESCs) display substantial heterogeneity in gene expression, implying the existence of discrete substates within the stem cell compartment. To determine whether these substates impact fate decisions of hESCs we used a GFP reporter line to investigate the properties of fractions of putative undifferentiated cells defined by their differential expression of the endoderm transcription factor, GATA6, together with the hESC surface marker, SSEA3. By single-cell cloning, we confirmed that substates characterized by expression of GATA6 and SSEA3 include pluripotent stem cells capable of long-term self-renewal. When clonal stem cell colonies were formed from GATA6-positive and GATA6-negative cells, more of those derived from GATA6-positive cells contained spontaneously differentiated endoderm cells than similar colonies derived from the GATA6-negative cells. We characterized these discrete cellular states using single-cell transcriptomic analysis, identifying a potential role for SOX17 in the establishment of the endoderm-biased stem cell state.

SUBMITTER: Allison TF 

PROVIDER: S-EPMC5993559 | biostudies-literature | 2018 Jun

REPOSITORIES: biostudies-literature

altmetric image

Publications

Identification and Single-Cell Functional Characterization of an Endodermally Biased Pluripotent Substate in Human Embryonic Stem Cells.

Allison Thomas F TF   Smith Andrew J H AJH   Anastassiadis Konstantinos K   Sloane-Stanley Jackie J   Biga Veronica V   Stavish Dylan D   Hackland James J   Sabri Shan S   Langerman Justin J   Jones Mark M   Plath Kathrin K   Coca Daniel D   Barbaric Ivana I   Gokhale Paul P   Andrews Peter W PW  

Stem cell reports 20180517 6


Human embryonic stem cells (hESCs) display substantial heterogeneity in gene expression, implying the existence of discrete substates within the stem cell compartment. To determine whether these substates impact fate decisions of hESCs we used a GFP reporter line to investigate the properties of fractions of putative undifferentiated cells defined by their differential expression of the endoderm transcription factor, GATA6, together with the hESC surface marker, SSEA3. By single-cell cloning, we  ...[more]

Similar Datasets

| S-EPMC6695399 | biostudies-literature
2018-05-29 | GSE113168 | GEO
2019-08-22 | GSE123465 | GEO
| S-EPMC3202894 | biostudies-literature
| S-EPMC3182033 | biostudies-literature
| PRJNA450344 | ENA
2019-08-22 | GSE123466 | GEO
2019-08-22 | GSE123470 | GEO
| S-EPMC5544294 | biostudies-literature
| S-EPMC9368986 | biostudies-literature