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Gut Microbiome Composition in Non-human Primates Consuming a Western or Mediterranean Diet.

ABSTRACT: The mammalian gastrointestinal tract harbors a highly diverse and dynamic community of bacteria. The array of this gut bacterial community, which functions collectively as a fully unified organ in the host metabolism, varies greatly among different host species and can be shaped by long-term nutritional interventions. Non-human primates, our close phylogenetic relatives and ancestors, provide an excellent model for studying diet-microbiome interaction; however, compared to clinical and rodent studies, research targeting primate gut microbiome has been limited. Herein, we analyze the gut microbiome composition in female cynomolgus macaques (Macaca fascicularis; n = 20) after the long-term (2.5 years) consumption of diets designed to mimic recent human Western- (WD; n = 10) or Mediterranean-type (MD; n = 10) diets. Microbiome diversity in MD consumers was significantly higher by the Shannon diversity index compared to the WD consumers, with similar but non-significant trends noted for the diversity metrics of species richness (Chao 1), observed operational taxonomic units (OTUs) and phylogenetic diversity (PD) whole Tree. Compared to the MD, the WD group demonstrated a higher Firmicutes-Bacteroides ratio and a significantly higher abundance of families Clostridiacea and Lactobacillaceae. Further analyses reveal significantly higher abundance of genera Lactobacillus, Clostridium, Faecalibacterium, and Oscillospira and lower abundance of Ruminococcus and Coprococcus in MD consumers relative to WD consumers. OTUs belonging to several species also show significant differences between the two groups, with Lactobacillus species demonstrating a prominently higher abundance in the MD consumers. The data reveal several differences in the gut microbiome of primates consuming the two different diets and should be useful for further studies aimed at understanding the diet-microbiome-health interactions in primates.

SUBMITTER: Nagpal R

PROVIDER: S-EPMC5996930 | biostudies-literature |

REPOSITORIES: biostudies-literature

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Project description:Abstract Objectives While it is known that specific components of diet namely fiber, fatty acids, or polyphenols can modulate the gut microbiota, literature describing the influence of a specific dietary pattern such as the Mediterranean Diet (MD) on enteric microbiota especially in relation to health are scarce. The aim of this study was to evaluate whether a MD intervention and the adherence to MD influences the gut fecal microbial composition in firefighters participating in Feeding America's Bravest, a randomized control trial. Methods Participants were firefighters who received a MD Nutritional Intervention (n = 22) or standard dietary advice (n = 24) as part of a cluster-randomized, controlled trial for 12 months. A lifestyle and food frequency questionnaire was administered and adherence scores to the MD were calculated (PREDIMED and Modified MD Score). Bacterial 16S rRNA sequencing was performed from fecal samples, and the microbial composition was analyzed with a bioinformatics pipeline implemented using QIIME 2. R software was used for linear modeling. Results The predominant bacteria phyla in both groups were Firmicutes (52.9%), Bacteroidetes (39.8%), Proteobacteria (3.5%), and Actinobacteria (2.0%). A significant increase in the genus Prevotella was found in those in the intervention group (1.45 log-fold, P = 0.018) compared to controls. Furthermore, linear modeling revealed that higher adherence to MD was associated with lower abundance of Lachnospiriceae UCG-010 (R2 = 0.205, P < 0.001) and Eubacterium ventriosum group (R2 = 0.101, P = 0.016). There were no significant differences in alpha or beta diversity between the control and intervention group. Conclusions A MD intervention as well as higher adherence influence gut microbiota composition; specifically, Prevotella, a genus previously associated with plant-rich diets, was significantly higher in the intervention group. Additionally, higher adherence to MD was associated with multiple genera of bacteria previously involved in SCFA production, which may help elucidate the beneficial effects of the Mediterranean Diet. Funding Sources Grant support: EMW-2014-FP-00612, US Department of Homeland Security and Ohio University Startup funds. Trial Registration Number: NCT02941757

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Gut Microbiome Composition in Non-human Primates Consuming a Western or Mediterranean Diet.

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