Dataset Information

Human plasma and serum extracellular small RNA reference profiles and their clinical utility.

ABSTRACT: Circulating extracellular RNAs (exRNAs) have the potential to serve as biomarkers for a wide range of medical conditions. However, limitations in existing exRNA isolation methods and a lack of knowledge on parameters affecting exRNA variability in human samples may hinder their successful discovery and clinical implementation. Using combinations of denaturants, reducing agents, proteolysis, and revised organic extraction, we developed an automated, high-throughput approach for recovery of exRNAs and exDNA from the same biofluid sample. We applied this method to characterize exRNAs from 312 plasma and serum samples collected from 13 healthy volunteers at 12 time points over a 2-month period. Small RNA cDNA library sequencing identified nearly twofold increased epithelial-, muscle-, and neuroendocrine-cell-specific miRNAs in females, while fasting and hormonal cycle showed little effect. External standardization helped to detect quantitative differences in erythrocyte and platelet-specific miRNA contributions and in miRNA concentrations between biofluids. It also helped to identify a study participant with a unique exRNA phenotype featuring a miRNA signature of up to 20-fold elevated endocrine-cell-specific miRNAs and twofold elevated total miRNA concentrations stable for over 1 year. Collectively, these results demonstrate an efficient and quantitative method to discern exRNA phenotypes and suggest that plasma and serum RNA profiles are stable over months and can be routinely monitored in long-term clinical studies.

SUBMITTER: Max KEA

PROVIDER: S-EPMC6003356 | biostudies-literature | 2018 Jun

REPOSITORIES: biostudies-literature

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Human plasma and serum extracellular small RNA reference profiles and their clinical utility.

Max Klaas E A KEA Bertram Karl K Akat Kemal Marc KM Bogardus Kimberly A KA Li Jenny J Morozov Pavel P Ben-Dov Iddo Z IZ Li Xin X Weiss Zachary R ZR Azizian Azadeh A Sopeyin Anuoluwapo A Diacovo Thomas G TG Adamidi Catherine C Williams Zev Z Tuschl Thomas T

Proceedings of the National Academy of Sciences of the United States of America 20180518 23

Circulating extracellular RNAs (exRNAs) have the potential to serve as biomarkers for a wide range of medical conditions. However, limitations in existing exRNA isolation methods and a lack of knowledge on parameters affecting exRNA variability in human samples may hinder their successful discovery and clinical implementation. Using combinations of denaturants, reducing agents, proteolysis, and revised organic extraction, we developed an automated, high-throughput approach for recovery of exRNAs ...[more]

PMID: 29777089

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Dataset Information

Human plasma and serum extracellular small RNA reference profiles and their clinical utility.

Publications

Human plasma and serum extracellular small RNA reference profiles and their clinical utility.

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