Browse
Submit Data
Databases
API
Help

Dataset Information

33 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequence of Lychnis Mottle Virus Isolated in Japan.

ABSTRACT: We report here the first complete genome sequence of a Japanese isolate of lychnis mottle virus (LycMoV-J). The genome segments of LycMoV-J have a unique structure in their 3' untranslated regions, and the encoded proteins have the same structure as that of an isolate reported from South Korea.

SUBMITTER: Fujimoto Y

PROVIDER: S-EPMC6013604 | biostudies-literature | 2018 Jun

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Sequence of Lychnis Mottle Virus Isolated in Japan.

Fujimoto Yuji Y Nijo Takamichi T Hosoe Naoi N Watanabe Kiyoto K Maejima Kensaku K Yamaji Yasuyuki Y Namba Shigetou S

Genome announcements 20180621 25

We report here the first complete genome sequence of a Japanese isolate of lychnis mottle virus (LycMoV-J). The genome segments of LycMoV-J have a unique structure in their 3' untranslated regions, and the encoded proteins have the same structure as that of an isolate reported from South Korea. ...[more]

PMID: 29930049

Similar Datasets

First Complete Genome Sequence of Cucumber green mottle mosaic virus Isolated from Australia.

Project description:We present here the first complete genome sequence of the tobamovirus Cucumber green mottle mosaic virus (CGMMV) from Australia, obtained from an infected cucumber plant. Compared with other CGMMV genomes, its closest nucleotide identities were 99.6% to KP772568, 99.3% to KF155229, and 99.1% to DQ767631 from Canada, Israel, and India, respectively.

| S-EPMC5364214 | biostudies-literature

Complete Genome Sequence of Iris Severe Mosaic Virus Isolated in Japan.

Project description:The complete genome sequence of an iris severe mosaic virus isolate (ISMV) from Iris tectorum in Japan was determined for the first time. According to sequence identity analyses, our specimen is closely related to isolates reported from China.

| S-EPMC6460025 | biostudies-literature

The complete nucleotide sequence of the maize chlorotic mottle virus genome.

Project description:The complete nucleotide sequence of the maize chlorotic mottle virus (MCMV) genome has been determined to be 4437 nucleotides. The viral genome has four long open reading frames (ORFs) which could encode polypeptides of 31.6, 50, 8.9 and 25.1 kd. If the termination codons, for the polypeptides encoded by the 50 and 8.9 kd ORFs are suppressed, readthrough products of 111 and 32.7 kd result. The 31.6 and 50 kd ORFs overlap for nearly the entire length of the 31.6 kd ORF. Striking amino acid homology has been observed between two potential polypeptides encoded by MCMV and polypeptides encoded by carnation mottle virus (CarMV) and turnip crinkle virus (TCV). The 25.1 kd ORF most likely encodes the capsid protein. The similar genome organization and amino acid sequence homology of MCMV with CarMV and TCV suggest an evolutionary relationship with these members of the carmovirus group.

| S-EPMC317721 | biostudies-other

Complete Genome Sequence of Mirabilis Crinkle Mosaic Virus Isolated from Pokeweed in Japan.

Project description:The complete genome sequence of a pokeweed (Phytolacca americana L.) isolate of mirabilis crinkle mosaic virus (MiCMV) in Japan was determined.

| S-EPMC8201631 | biostudies-literature

Complete genome sequence of a carnation mottle virus infecting hop plants.

Project description:The Carnation mottle virus (CarMV) is a single positive-strand RNA virus belonging to the genus Carmovirus. The major natural host for CarMV is the carnation. In this study, using transcriptome data, we provide for the first time a nearly complete genome sequence of CarMV infecting hop plants.

| S-EPMC4432326 | biostudies-literature

Coding-Complete Sequence of <i>Cowpea Mild Mottle Virus</i> Isolated from Iraq.

Project description:Here, we report the coding-complete sequence of Cowpea mild mottle virus (CPMMV; strain Hilla) in cowpea using total transcriptome sequencing (RNA-seq) and bioinformatics analyses. The sequence length was 8,119 bp long and has 6 open reading frames. The genome was phylogenetically close to two isolates collected from Ghana.

| S-EPMC10019285 | biostudies-literature

Complete Genome Sequence of Clover Yellow Mosaic Virus Isolated from White Clover in Japan.

Project description:Clover yellow mosaic virus (ClYMV) infecting white clover was isolated in Japan, and the complete genome sequence was determined.

| S-EPMC9202368 | biostudies-literature

Complete Genome Sequence of Infectious Bronchitis Virus Strain JP/KH/64, Isolated in Japan.

Project description:Here, we report the complete genome sequence of infectious bronchitis virus (IBV) strain JP/KH/64, which is the reference strain for the JP-I genotype in Japan. This information should be useful for an in-depth understanding of the evolution of the JP-I genotype.

| S-EPMC8496369 | biostudies-literature

Near-Complete Genome Sequence of Ryegrass Mottle Virus from Irrigation Water in Ecuador.

Project description:In this work, we report the near-complete genome sequence of ryegrass mottle virus identified in irrigation water through next-generation sequencing and de novo assembly. The genome is 4,247 bp long, arranged in five open reading frames with a 5' untranslated region (UTR) of 87 nucleotides and a 3' UTR of 247 nucleotides.

| S-EPMC8103856 | biostudies-literature

Complete Genome Sequence of a Tomato Isolate of Parietaria Mottle Virus from Italy.

Project description:We report here the complete genome sequence of isolate T32 of parietaria mottle virus (PMoV) infecting tomato plants in Turin, Italy, obtained by Sanger sequencing. T32 shares 90.48 to 96.69% nucleotide identity with other two PoMV isolates, CR8 and Pe1, respectively, whose complete genome sequences are available.

| S-EPMC4683225 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data