Unknown

Dataset Information

0

PASI: A novel pathway method to identify delicate group effects.


ABSTRACT: Pathway analysis is a common approach in diverse biomedical studies, yet the currently-available pathway tools do not typically support the increasingly popular personalized analyses. Another weakness of the currently-available pathway methods is their inability to handle challenging data with only modest group-based effects compared to natural individual variation. In an effort to address these issues, this study presents a novel pathway method PASI (Pathway Analysis for Sample-level Information) and demonstrates its performance on complex diseases with different levels of group-based differences in gene expression. PASI is freely available as an R package.

SUBMITTER: Jaakkola MK 

PROVIDER: S-EPMC6033442 | biostudies-literature | 2018

REPOSITORIES: biostudies-literature

altmetric image

Publications

PASI: A novel pathway method to identify delicate group effects.

Jaakkola Maria K MK   McGlinchey Aidan J AJ   Klén Riku R   Elo Laura L LL  

PloS one 20180705 7


Pathway analysis is a common approach in diverse biomedical studies, yet the currently-available pathway tools do not typically support the increasingly popular personalized analyses. Another weakness of the currently-available pathway methods is their inability to handle challenging data with only modest group-based effects compared to natural individual variation. In an effort to address these issues, this study presents a novel pathway method PASI (Pathway Analysis for Sample-level Informatio  ...[more]

Similar Datasets

| S-EPMC9047066 | biostudies-literature
| S-EPMC8194229 | biostudies-literature
| S-EPMC8208534 | biostudies-literature
| S-EPMC4609017 | biostudies-literature
| S-EPMC5436445 | biostudies-literature
| S-EPMC3900465 | biostudies-literature
| S-EPMC8287415 | biostudies-literature
| S-JCBD-201412008 | bioimages
| S-EPMC3574754 | biostudies-literature
| S-EPMC9710631 | biostudies-literature