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Sex change in scallop Patinopecten yessoensis: response to population composition?

ABSTRACT: Sex structure is very labile between populations and specific for each population because it is a result of genetic, ontogenetic and biocenotic influences on the mollusks. In this study, the age frequency distribution, age-sex structure, and sex ratio were assessed in the wild populations of the Yeso scallop Patinopecten yessoensis (Jay) observed at fifteen sites in the northwestern Sea of Japan (=East Sea). The sex ratio varied between the populations from 0.83:1 to 1.52:1 (males/females), with the mean sex ratio being 1.03 ± 0.05:1. Within a population, the proportions of males and females in term of number differed between age classes. Males were more numerous than females in the younger age classes, and females prevailed over males in the older age classes. It was found that in different scallop populations the sex change occurred at different ages. In the populations that predominantly consisted of young (two- to four-year-old) individuals, males prevailed over females in the age class 2 yr.; the equal male/female proportion was found in the age class 3 yr.; and in older age classes, females prevailed over males. Another pattern was observed in the populations that consisted mainly of middle-aged (five- to six-year-old) individuals. Here, the age-sex ratio became equal at an age of 4-6 years. In the old populations (mainly 6-12-year-olds) the equal male/female proportion was observed at an age of 8-10 years. Thus, the age of sex change was not uniform for the scallop populations. It depended on the age structure of the population and, thus, was socially controlled. The greater number of females in the older age classes suggests a protandric sex change.

SUBMITTER: Silina AV

PROVIDER: S-EPMC6046201 | biostudies-literature | 2018

REPOSITORIES: biostudies-literature

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Sex change in scallop <i>Patinopecten yessoensis</i>: response to population composition?

Silina Alla V AV

PeerJ 20180712

Sex structure is very labile between populations and specific for each population because it is a result of genetic, ontogenetic and biocenotic influences on the mollusks. In this study, the age frequency distribution, age-sex structure, and sex ratio were assessed in the wild populations of the Yeso scallop <i>Patinopecten yessoensis</i> (Jay) observed at fifteen sites in the northwestern Sea of Japan (=East Sea). The sex ratio varied between the populations from 0.83:1 to 1.52:1 (males/females ...[more]

PMID: 30013855

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Project description:BackgroundThe Yesso scallop, Patinopecten (Mizuhopecten) yessoensis, is a commercially important bivalve in the coastal countries of Northeast Asia. It has complex modes of sex differentiation, but knowledge of the mechanisms underlying this sex determination and differentiation is limited.ResultsIn this study, the gonad tissues from females and males at three developmental stages were used to investigate candidate genes and networks for sex differentiation via RNA-Req. A total of 901,980,606 high quality clean reads were obtained from 18 libraries, of which 417 expressed male-specific genes and 754 expressed female-specific genes. Totally, 10,074 genes differentially expressed in females and males were identified. Weighted gene co-expression network analysis (WGCNA) revealed that turquoise and green gene modules were significantly positively correlated with male gonads, while coral1 and black modules were significantly associated with female gonads. The most important gene for sex determination and differentiation was Pydmrt 1, which was the only gene discovered that determined the male sex phenotype during early gonadal differentiation. Enrichment analyses of GO terms and KEGG pathways revealed that genes involved in metabolism, genetic and environmental information processes or pathways are sex-biased. Forty-nine genes in the five modules involved in sex differentiation or determination were identified and selected to construct a gene co-expression network and a hypothesized sex differentiation pathway.ConclusionsThe current study focused on screening genes of sex differentiation in Yesso scallop, highlighting the potential regulatory mechanisms of gonadal development in P. yessoensis. Our data suggested that WCGNA can facilitate identification of key genes for sex differentiation and determination. Using this method, a hypothesized P. yessoensis sex determination and differentiation pathway was constructed. In this pathway, Pydmrt 1 may have a leading function.

Project description:BackgroundBivalves comprise around 30,000 extant species and have received much attention for their importance in ecosystems, aquaculture and evolutionary studies. Despite the increasing application of real-time quantitative reverse transcription PCR (qRT-PCR) in gene expression studies on bivalve species, little research has been conducted on reference gene selection which is critical for reliable and accurate qRT-PCR analysis. For scallops, systematic evaluation of reference genes that can be used among tissues or embryo/larva stages is lacking, and β-actin (ACT) is most frequently used as qRT-PCR reference gene without validation.ResultsIn this study, 12 commonly used candidate reference genes were selected from the transcriptome data of Yesso scallop (Patinopectenyessoensis) for suitable qRT-PCR reference genes identification. The expression of these genes in 36 tissue samples and 15 embryo/larva samples under normal physiological conditions was examined by qRT-PCR, and their expression stabilities were evaluated using three statistic algorithms, geNorm, NormFinder, and comparative ∆Ct method. Similar results were obtained by the three approaches for the most and the least stably expressed genes. Final comprehensive ranking for the 12 genes combing the results from the three programs showed that, for different tissues, DEAD-box RNA helicase (HELI), ubiquitin (UBQ), and 60S ribosomal protein L16 (RPL16) were the optimal reference genes combination, while for different embryo/larva stages, gene set containing Cytochrome B (CB), Cytochrome C (CC), Histone H3.3 (His3.3), and Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) were recommended for qRT-PCR normalization. ACT was among the least stable genes for both adult tissues and embryos/larvae.ConclusionsThis work constitutes the first systematic analysis on reference genes selection for qRT-PCR normalization in scallop under normal conditions. The suitable reference genes we recommended will be useful for the identification of genes related to biological processes in Yesso scallop, and also in the reference gene selection for other scallop or bivalve species.

Project description:Shell color is an important trait that is used in breeding the Japanese scallop Patinopecten yessoensis, the most economically important scallop species in China. We constructed four transcriptome libraries from different shell color lines of P. yessoensis: the left and right shell mantles of ordinary strains of P. yessoensis and the left shell mantles of the 'Ivory' and 'Maple' strains. These four libraries were paired-end sequenced using the Illumina HiSeq 2000 platform and contained 54,802,692 sequences, 40,798,962 sequences, 74,019,262 sequences, and 44,466,166 sequences, respectively. A total of 214,087,082 expressed sequence tags were assembled into 73,522 unigenes with an average size of 1,163 bp. When the data were compared against the public Nr and Swiss-Prot databases using BlastX, nearly 30.55% (22,458) of the unigenes were significantly matched to known unique proteins. Gene Ontology annotation and pathway mapping analysis using the Kyoto Encyclopedia of Genes and Genomes categorized unigenes according to their diverse biological functions and processes and identified candidate genes that were potentially involved in growth, pigmentation, metal transcription, and immunity. Expression profile analysis was performed on all four libraries and many differentially expressed genes were identified. In addition, 5,772 simple sequence repeats were obtained from the P. yessoensis transcriptomes, and 464,197, 395,646, and 310,649 single nucleotide polymorphisms were revealed in the ordinary strains, the 'Ivory' strain, and the 'Maple' strain, respectively. These results provide valuable information for future genomic studies on P. yessoensis and improve our understanding of the molecular mechanisms involved in the growth, immunity, shell coloring, and shell biomineralization of this species. These resources also may be used in a variety of applications, such as trait mapping, marker-assisted breeding, studies of population genetics and genomics, and work on functional genomics.

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Sex change in scallop Patinopecten yessoensis: response to population composition?

Publications

Sex change in scallop <i>Patinopecten yessoensis</i>: response to population composition?

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