Dataset Information

Analysis of time-varying signals using continuous wavelet and synchrosqueezed transforms.

ABSTRACT: The continuous wavelet transform (CWT) has played a key role in the analysis of time-frequency information in many different fields of science and engineering. It builds on the classical short-time Fourier transform but allows for variable time-frequency resolution. Yet, interpretation of the resulting spectral decomposition is often hindered by smearing and leakage of individual frequency components. Computation of instantaneous frequencies, combined by frequency reassignment, may then be applied by highly localized techniques, such as the synchrosqueezing transform and ConceFT, in order to reduce these effects. In this paper, we present the synchrosqueezing transform together with the CWT and illustrate their relative performances using four signals from different fields, namely the LIGO signal showing gravitational waves, a 'FanQuake' signal displaying observed vibrations during an American football game, a seismic recording of the Mw 8.2 Chiapas earthquake, Mexico, of 8 September 2017, followed by the Irma hurricane, and a volcano-seismic signal recorded at the Popocatépetl volcano showing a tremor followed by harmonic resonances. These examples illustrate how high-localization techniques improve analysis of the time-frequency information of time-varying signals.This article is part of the theme issue 'Redundancy rules: the continuous wavelet transform comes of age'.

SUBMITTER: Tary JB

PROVIDER: S-EPMC6048578 | biostudies-literature | 2018 Aug

REPOSITORIES: biostudies-literature

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Analysis of time-varying signals using continuous wavelet and synchrosqueezed transforms.

Tary Jean Baptiste JB Herrera Roberto Henry RH van der Baan Mirko M

Philosophical transactions. Series A, Mathematical, physical, and engineering sciences 20180801 2126

The continuous wavelet transform (CWT) has played a key role in the analysis of time-frequency information in many different fields of science and engineering. It builds on the classical short-time Fourier transform but allows for variable time-frequency resolution. Yet, interpretation of the resulting spectral decomposition is often hindered by smearing and leakage of individual frequency components. Computation of instantaneous frequencies, combined by frequency reassignment, may then be appli ...[more]

PMID: 29986922

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Project description:BackgroundElectrocardiogram (ECG) signal, an important indicator for heart problems, is commonly corrupted by a low-frequency baseline wander (BW) artifact, which may cause interpretation difficulty or inaccurate analysis. Unlike current state-of-the-art approach using band-pass filters, wavelet transforms can accurately capture both time and frequency information of a signal. However, extant literature is limited in applying wavelet transforms (WTs) for baseline wander removal. In this study, we aimed to evaluate 5 wavelet families with a total of 14 wavelets for removing ECG baseline wanders from a semi-synthetic dataset.MethodsWe created a semi-synthetic ECG dataset based on a public QT Database on Physionet repository with ECG data from 105 patients. The semi-synthetic ECG dataset comprised ECG excerpts from the QT database superimposed with artificial baseline wanders. We extracted one ECG excerpt from each of 105 patients, and the ECG excerpt comprised 14 s of randomly selected ECG data. Twelve baseline wanders were manually generated, including sinusoidal waves, spikes and step functions. We implemented and evaluated 14 commonly used wavelets up to 12 WT levels. The evaluation metric was mean-square-error (MSE) between the original ECG excerpt and the processed signal with artificial BW removed.ResultsAmong the 14 wavelets, Daubechies-3 wavelet and Symlets-3 wavelet with 7 levels of WT had best performance, MSE = 0.0044. The average MSEs for sinusoidal waves, step, and spike functions were 0.0271, 0.0304, 0.0199 respectively. For artificial baseline wanders with spikes or step functions, wavelet transforms in general had lower performance in removing the BW; however, WTs accurately located the temporal position of an impulse edge.ConclusionsWe found wavelet transforms in general accurately removed various baseline wanders. Daubechies-3 and Symlets-3 wavelets performed best. The study could facilitate future real-time processing of streaming ECG signals for clinical decision support systems.

Project description:Introduction: The selection of an appropriate window size, window function, and functional connectivity (FC) metric in the sliding window method is not straightforward due to the absence of ground truth. Methods: A previously proposed wavelet-based method was accordingly adjusted for estimating time-varying FC (TVFC) and was applied to a large high-quality, low-motion dataset of 400 resting-state functional magnetic resonance imaging data. Specifically, the wavelet coherence magnitude and relative phase were averaged across wavelet (frequency) scales to yield TVFC and synchronization patterns. To assess whether the observed fluctuations in TVFC were statistically significant (dynamic FC [dFC]; the distinction between TVFC and dFC is intentional), surrogate data were generated using the multivariate phase randomization (MVPR) and multivariate autoregressive randomization (MVAR) methods to define the null hypothesis of dFC absence. Results: By averaging across all frequencies, core regions of the default mode network (DMN; medial prefrontal and posterior cingulate cortices, inferior parietal lobes, hippocampal formation) were found to exhibit dFC (test-retest reproducibility of 90%) and were also synchronized in activity (-15° ≤ phase ≤15°). When averaging across distinct frequency bands, the same dynamic connections were identified, with the majority of them identified in the frequency range (0.01, 0.198) Hz, though with lower test-retest reproducibility (<66%). Additional analysis suggested that MVPR method better preserved properties (p < 10-10), including time-averaged coherence, of the original data compared with MVAR approach. Conclusions: The wavelet-based approach identified dynamic associations between the core DMN regions with fewer choices in parameters, compared with sliding window method. Impact statement We employed a wavelet-based method, previously used in the literature, and proposed modifications to assess time-varying functional connectivity in resting-state functional magnetic resonance imaging. With this approach, dynamic connections within the default mode network were identified, involving the medial prefrontal and posterior cingulate cortices, inferior parietal lobes, and hippocampal formation, which were also highly consistent in test-retest analysis (test-retest reproducibility of 90%), without the need to select window size, window function, and functional connectivity metric as with the sliding window method, whereby no consensus on the appropriate choices of hyperparameters currently exists in the literature.

Dataset Information

Analysis of time-varying signals using continuous wavelet and synchrosqueezed transforms.

Publications

Analysis of time-varying signals using continuous wavelet and synchrosqueezed transforms.

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