Compositional bias coupled with selection and mutation pressure drives codon usage in Brassica campestris genes.
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ABSTRACT:
SUBMITTER: Paul P
PROVIDER: S-EPMC6049677 | biostudies-literature | 2018 Jun
REPOSITORIES: biostudies-literature
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Compositional bias coupled with selection and mutation pressure drives codon usage in <i>Brassica campestris</i> genes.
Paul Prosenjit P Malakar Arup Kumar AK Chakraborty Supriyo S
Food science and biotechnology 20171212 3
The plant <i>Brassica campestris</i> includes the vegetables turnip and Chinese cabbage, important plants of economic importance. Here, we have analysed the codon usage bias of <i>B. campestris</i> for 116 protein coding genes. Neutrality analysis showed that <i>B. campestris</i> had a wide range of GC3s, and a significant correlation was observed between GC12 and GC3. Nc versus GC3s plot showed a few genes on or proximate to the expected curve, but the majority of points were found to be scatte ...[more]
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