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TOPPE: A framework for rapid prototyping of MR pulse sequences.

ABSTRACT: PURPOSE:To introduce a framework for rapid prototyping of MR pulse sequences. METHODS:We propose a simple file format, called "TOPPE", for specifying all details of an MR imaging experiment, such as gradient and radiofrequency waveforms and the complete scan loop. In addition, we provide a TOPPE file "interpreter" for GE scanners, which is a binary executable that loads TOPPE files and executes the sequence on the scanner. We also provide MATLAB scripts for reading and writing TOPPE files and previewing the sequence prior to hardware execution. With this setup, the task of the pulse sequence programmer is reduced to creating TOPPE files, eliminating the need for hardware-specific programming. No sequence-specific compilation is necessary; the interpreter only needs to be compiled once (for every scanner software upgrade). We demonstrate TOPPE in three different applications: k-space mapping, non-Cartesian PRESTO whole-brain dynamic imaging, and myelin mapping in the brain using inhomogeneous magnetization transfer. RESULTS:We successfully implemented and executed the three example sequences. By simply changing the various TOPPE sequence files, a single binary executable (interpreter) was used to execute several different sequences. CONCLUSION:The TOPPE file format is a complete specification of an MR imaging experiment, based on arbitrary sequences of a (typically small) number of unique modules. Along with the GE interpreter, TOPPE comprises a modular and flexible platform for rapid prototyping of new pulse sequences. Magn Reson Med 79:3128-3134, 2018. © 2017 International Society for Magnetic Resonance in Medicine.

SUBMITTER: Nielsen JF

PROVIDER: S-EPMC6134833 | biostudies-literature | 2018 Jun

REPOSITORIES: biostudies-literature

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TOPPE: A framework for rapid prototyping of MR pulse sequences.

Nielsen Jon-Fredrik JF Noll Douglas C DC

Magnetic resonance in medicine 20171102 6

<h4>Purpose</h4>To introduce a framework for rapid prototyping of MR pulse sequences.<h4>Methods</h4>We propose a simple file format, called "TOPPE", for specifying all details of an MR imaging experiment, such as gradient and radiofrequency waveforms and the complete scan loop. In addition, we provide a TOPPE file "interpreter" for GE scanners, which is a binary executable that loads TOPPE files and executes the sequence on the scanner. We also provide MATLAB scripts for reading and writing TOP ...[more]

PMID: 29096052

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TOPPE: A framework for rapid prototyping of MR pulse sequences.

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TOPPE: A framework for rapid prototyping of MR pulse sequences.

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