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Large-scale whole-exome sequencing association studies identify rare functional variants influencing serum urate levels.


ABSTRACT: Elevated serum urate levels can cause gout, an excruciating disease with suboptimal treatment. Previous GWAS identified common variants with modest effects on serum urate. Here we report large-scale whole-exome sequencing association studies of serum urate and kidney function among ?19,517 European ancestry and African-American individuals. We identify aggregate associations of low-frequency damaging variants in the urate transporters SLC22A12 (URAT1; p?=?1.3?×?10-56) and SLC2A9 (p?=?4.5?×?10-7). Gout risk in rare SLC22A12 variant carriers is halved (OR?=?0.5, p?=?4.9?×?10-3). Selected rare variants in SLC22A12 are validated in transport studies, confirming three as loss-of-function (R325W, R405C, and T467M) and illustrating the therapeutic potential of the new URAT1-blocker lesinurad. In SLC2A9, mapping of rare variants of large effects onto the predicted protein structure reveals new residues that may affect urate binding. These findings provide new insights into the genetic architecture of serum urate, and highlight molecular targets in SLC22A12 and SLC2A9 for lowering serum urate and preventing gout.

SUBMITTER: Tin A 

PROVIDER: S-EPMC6185909 | biostudies-literature | 2018 Oct

REPOSITORIES: biostudies-literature

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Large-scale whole-exome sequencing association studies identify rare functional variants influencing serum urate levels.

Tin Adrienne A   Li Yong Y   Brody Jennifer A JA   Nutile Teresa T   Chu Audrey Y AY   Huffman Jennifer E JE   Yang Qiong Q   Chen Ming-Huei MH   Robinson-Cohen Cassianne C   Macé Aurélien A   Liu Jun J   Demirkan Ayşe A   Sorice Rossella R   Sedaghat Sanaz S   Swen Melody M   Yu Bing B   Ghasemi Sahar S   Teumer Alexanda A   Vollenweider Peter P   Ciullo Marina M   Li Meng M   Uitterlinden André G AG   Kraaij Robert R   Amin Najaf N   van Rooij Jeroen J   Kutalik Zoltán Z   Dehghan Abbas A   McKnight Barbara B   van Duijn Cornelia M CM   Morrison Alanna A   Psaty Bruce M BM   Boerwinkle Eric E   Fox Caroline S CS   Woodward Owen M OM   Köttgen Anna A  

Nature communications 20181012 1


Elevated serum urate levels can cause gout, an excruciating disease with suboptimal treatment. Previous GWAS identified common variants with modest effects on serum urate. Here we report large-scale whole-exome sequencing association studies of serum urate and kidney function among ≤19,517 European ancestry and African-American individuals. We identify aggregate associations of low-frequency damaging variants in the urate transporters SLC22A12 (URAT1; p = 1.3 × 10<sup>-56</sup>) and SLC2A9 (p =   ...[more]

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